This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Cyclophilin 3D structures
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 7: | Line 7: | ||
**[[2x25]], [[2x2a]], [[3k0m]], [[3k0n]], [[1w8l]], [[1w8m]], [[1w8v]], [[1rmh]], [[2cpl]], [[5kv7]], [[5kv6]], [[5kv5]], [[5kv4]], [[5kv3]], [[5kv2]], [[5kv1]], [[5kv0]], [[5kuz]], [[5kuw]], [[5kuv]], [[5kuu]], [[5kus]], [[5kur]], [[5kuq]], [[5kuo]], [[5kun]], [[4kul]], [[5f66]], [[4yup]], [[4yuo]], [[4yun]], [[4yum]], [[4yul]], [[4yuk]], [[4yuj]], [[4yui]], [[4yuh]], [[4yug]], [[2n0t]], [[5kul]], [[6u5c]], [[6u5d]], [[6u5e]], [[6u5g]] – hCyp-A – human<br /> | **[[2x25]], [[2x2a]], [[3k0m]], [[3k0n]], [[1w8l]], [[1w8m]], [[1w8v]], [[1rmh]], [[2cpl]], [[5kv7]], [[5kv6]], [[5kv5]], [[5kv4]], [[5kv3]], [[5kv2]], [[5kv1]], [[5kv0]], [[5kuz]], [[5kuw]], [[5kuv]], [[5kuu]], [[5kus]], [[5kur]], [[5kuq]], [[5kuo]], [[5kun]], [[4kul]], [[5f66]], [[4yup]], [[4yuo]], [[4yun]], [[4yum]], [[4yul]], [[4yuk]], [[4yuj]], [[4yui]], [[4yuh]], [[4yug]], [[2n0t]], [[5kul]], [[6u5c]], [[6u5d]], [[6u5e]], [[6u5g]] – hCyp-A – human<br /> | ||
| - | **[[1oca]], [[2mzu]] – hCyp-A - NMR<br /> | + | **[[1oca]], [[2mzu]], [[7ta8]] – hCyp-A - NMR<br /> |
| - | **[[3k0o]], [[3k0p]], [[3k0q]], [[3k0r]], [[2alf]] ,[[6bta]], [[5wc7]] – hCyp-A (mutant)<br /> | + | **[[3k0o]], [[3k0p]], [[3k0q]], [[3k0r]], [[2alf]] ,[[6bta]], [[5wc7]], [[7qbw]] – hCyp-A (mutant)<br /> |
**[[4dgd]] - RmCyp-A (mutant) – Rhesus macaque <br /> | **[[4dgd]] - RmCyp-A (mutant) – Rhesus macaque <br /> | ||
**[[6fk1]] – mCyp-A – mouse<br /> | **[[6fk1]] – mCyp-A – mouse<br /> | ||
| Line 17: | Line 17: | ||
**[[4eyv]] – Cyp-A – ''Piriformospora indica''<br /> | **[[4eyv]] – Cyp-A – ''Piriformospora indica''<br /> | ||
**[[5ex2]], [[5ex1]] – Cyp-A – ''Hirschia baltica''<br /> | **[[5ex2]], [[5ex1]] – Cyp-A – ''Hirschia baltica''<br /> | ||
| + | **[[7zfm]] - EcCyp-A - ''Escherichia coli''<br /> | ||
| + | **[[7rfd]] - EcCyp-A (mutant) <br /> | ||
| + | **[[7a73]] – Cyp-A – ''Anabaena''<br /> | ||
* Cyclophilin-A complex | * Cyclophilin-A complex | ||
| Line 28: | Line 31: | ||
**[[2x2d]], [[1m9c]], [[1m9d]], [[1m9e]], [[1m9f]], [[1m9x]], [[1m9y]], [[1awq]], [[1awr]], [[1aws]], [[1awt]], [[1awu]], [[1awv]], [[1ak4]], [[1fgl]] - hCyp-A+HIV-1 N-terminal capsid domain<br /> | **[[2x2d]], [[1m9c]], [[1m9d]], [[1m9e]], [[1m9f]], [[1m9x]], [[1m9y]], [[1awq]], [[1awr]], [[1aws]], [[1awt]], [[1awu]], [[1awv]], [[1ak4]], [[1fgl]] - hCyp-A+HIV-1 N-terminal capsid domain<br /> | ||
**[[5fjb]] - hCyp-A + HIV-1 gag protein <br /> | **[[5fjb]] - hCyp-A + HIV-1 gag protein <br /> | ||
| + | **[[6y9w]], [[6y9v]], [[6y9x]], [[6y9y]], [[6y9z]], [[6zdj]] - hCyp-A + HIV-1 gag protein – Cryo EM <br /> | ||
**[[1zkf]] – hCyp-A+suc-AGPF-pNA<br /> | **[[1zkf]] – hCyp-A+suc-AGPF-pNA<br /> | ||
**[[1ynd]], [[1nmk]], [[5ta4]], [[5ta2]], [[5t9z]], [[5t9w]], [[5t9u]] – hCyp-A+ sanglifehrin derivaive<br /> | **[[1ynd]], [[1nmk]], [[5ta4]], [[5ta2]], [[5t9z]], [[5t9w]], [[5t9u]] – hCyp-A+ sanglifehrin derivaive<br /> | ||
**[[4n1s]], [[4n1r]], [[4n1q]], [[4n1p]], [[4n1o]], [[4n1n]], [[4n1m]], [[3rdd]], [[5noz]], [[5noy]], [[5nox]], [[5nou]], [[5nov]], [[5now]], [[5nor]], [[5nos]], [[5not]], [[5noq]], [[5lud]], [[6gji]], [[6gjj]], [[6gjl]], [[6gjm]], [[6gjn]], [[6gjp]], [[6gjr]], [[6gjy]], [[6gs6]], [[6x3r]], [[6x3y]], [[6x4m]], [[6x4n]], [[6x4o]], [[6x4p]], [[6x4q]] – hCyp-A + inhibitor<br /> | **[[4n1s]], [[4n1r]], [[4n1q]], [[4n1p]], [[4n1o]], [[4n1n]], [[4n1m]], [[3rdd]], [[5noz]], [[5noy]], [[5nox]], [[5nou]], [[5nov]], [[5now]], [[5nor]], [[5nos]], [[5not]], [[5noq]], [[5lud]], [[6gji]], [[6gjj]], [[6gjl]], [[6gjm]], [[6gjn]], [[6gjp]], [[6gjr]], [[6gjy]], [[6gs6]], [[6x3r]], [[6x3y]], [[6x4m]], [[6x4n]], [[6x4o]], [[6x4p]], [[6x4q]] – hCyp-A + inhibitor<br /> | ||
**[[2cyh]], [[3cyh]], [[4cyh]], [[5cyh]] - hCyp-A+dipeptide<br /> | **[[2cyh]], [[3cyh]], [[4cyh]], [[5cyh]] - hCyp-A+dipeptide<br /> | ||
| - | **[[1vbs]], [[1vbt]], [[2ms4]] – hCyp-A+tetrapeptide<br /> | + | **[[1vbs]], [[1vbt]], [[2ms4]], [[7abt]], [[7pcj]] – hCyp-A+tetrapeptide<br /> |
| - | **[[6j42]] - hCyp-A + synuclein peptide<br /> | + | **[[6i42]], [[6j42]] - hCyp-A + synuclein peptide<br /> |
**[[4ipz]] - hCyp-A (mutant) + peptide <br /> | **[[4ipz]] - hCyp-A (mutant) + peptide <br /> | ||
**[[4dga]], [[4dgb]], [[4dgc]] - RmCyp-A+HIV-1 Cyp-binding domain capsid protein (mutant) <br /> | **[[4dga]], [[4dgb]], [[4dgc]] - RmCyp-A+HIV-1 Cyp-binding domain capsid protein (mutant) <br /> | ||
| Line 53: | Line 57: | ||
**[[4frv]] – hoCyp-B (mutant)<br /> | **[[4frv]] – hoCyp-B (mutant)<br /> | ||
**[[1a58]], [[4jcp]] – Cyp-B – ''Brugia malayi''<br /> | **[[1a58]], [[4jcp]] – Cyp-B – ''Brugia malayi''<br /> | ||
| + | **[[7q6p]] – EcCyp-B <BR /> | ||
**[[2rs4]] – EcCyp-B - NMR<BR /> | **[[2rs4]] – EcCyp-B - NMR<BR /> | ||
| - | **[[1j2a]] – EcCyp-B (mutant)<br /> | + | **[[1j2a]], [[7n3j]] – EcCyp-B (mutant)<br /> |
**[[1v9t]] – EcCyp-B+peptidyl nitroanilide <br /> | **[[1v9t]] – EcCyp-B+peptidyl nitroanilide <br /> | ||
**[[1vai]] - EcCyp-B+peptidyl coumarin<br /> | **[[1vai]] - EcCyp-B+peptidyl coumarin<br /> | ||
| Line 66: | Line 71: | ||
* Cyclophilin-D or peptidyl-prolyl cis-trans isomerase F | * Cyclophilin-D or peptidyl-prolyl cis-trans isomerase F | ||
| - | **[[2bit]], [[3qyu]], [[6ybm]] – hCyp-D<br /> | + | **[[2bit]], [[3qyu]], [[6y3e]], [[6ybm]] – hCyp-D<br /> |
**[[4zsd]], [[4o8i]], [[4o8h]] - hCyp-D (mutant) <br /> | **[[4zsd]], [[4o8i]], [[4o8h]] - hCyp-D (mutant) <br /> | ||
**[[2biu]] – hCyp-D+DMSO<br /> | **[[2biu]] – hCyp-D+DMSO<br /> | ||
| Line 73: | Line 78: | ||
**[[4tot]] – hCyp-D + polypeptide inhibitor<br /> | **[[4tot]] – hCyp-D + polypeptide inhibitor<br /> | ||
**[[6y3e]], [[6r8o]], [[6r8w]], [[6r9s]], [[6r9u]], [[6r9x]], [[6ra1]] – hCyp-D + inhibitor<br /> | **[[6y3e]], [[6r8o]], [[6r8w]], [[6r9s]], [[6r9u]], [[6r9x]], [[6ra1]] – hCyp-D + inhibitor<br /> | ||
| - | **[[3r49]], [[3r4g]], [[3r54]], [[3r56]], [[3r57]], [[3r59]], [[3rcf]], [[3rcg]], [[3rci]], [[3rck]], [[3rcl]], [[3rd9]], [[3rda]], [[3rdb]], [[3rdc]], [[4j58]], [[4j59]], [[4j5a]], [[4j5b]], [[4j5c]], [[4j5d]], [[5ccs]], [[5ccr]], [[5ccq]], [[5ccn]], [[5cbw]], [[5cbv]], [[5cbu]], [[5cbt]], [[4zsc]], [[4xnc]], [[4j5e]], [[6r8l]] – hCyp-D (mutant) + inhibitor<br /> | + | **[[3r49]], [[3r4g]], [[3r54]], [[3r56]], [[3r57]], [[3r59]], [[3rcf]], [[3rcg]], [[3rci]], [[3rck]], [[3rcl]], [[3rd9]], [[3rda]], [[3rdb]], [[3rdc]], [[4j58]], [[4j59]], [[4j5a]], [[4j5b]], [[4j5c]], [[4j5d]], [[5ccs]], [[5ccr]], [[5ccq]], [[5ccn]], [[5cbw]], [[5cbv]], [[5cbu]], [[5cbt]], [[4zsc]], [[4xnc]], [[4j5e]], [[6r8l]], [[7ogi]], [[7pmt]], [[7tgs]], [[7tgt]], [[7tgu]], [[7tgv]], [[7th1]], [[7th6]], [[7th7]], [[7thc]], [[7thd]], [[7thf]] – hCyp-D (mutant) + inhibitor<br /> |
| - | * Cyclophilin-E or peptidyl-prolyl cis-trans isomerase E | + | * Cyclophilin-E or peptidyl-prolyl cis-trans isomerase E or Cyp33 |
| - | **[[ | + | **[[1zmf]], [[2r99]], [[3uch]] – hCyp-E PPIASE domain 137-301<br /> |
| - | **[[ | + | **[[2cqb]], [[3lpy]], [[3mdf]] – hCyp-E RRM domain 1-114<br /`> |
| - | **[[ | + | **[[2kyx]], [[7zev]] – hCyp-E RRM domain – NMR<br /> |
| - | **[[ | + | **[[7zew]], [[7zex]] – hCyp-E RRM domain + RNA – NMR<br /> |
| - | **[[ | + | **[[7zey]] – hCyp-E RRM domain + MLL1 zinc finger – NMR<br /> |
| + | **[[7zey]] – hCyp-E RRM domain + MLL1 zinc finger + histone H3 N-terminal – NMR<br /> | ||
**[[2ck1]], [[2cmt]] – Cyp-E – ''Schistosoma mansoni''<br /> | **[[2ck1]], [[2cmt]] – Cyp-E – ''Schistosoma mansoni''<br /> | ||
| Line 127: | Line 133: | ||
**[[3eov]] - LdCyp+cyclosporin A – ''Leishmania donovani''<br /> | **[[3eov]] - LdCyp+cyclosporin A – ''Leishmania donovani''<br /> | ||
**[[3bt8]] – LdCyp<br /> | **[[3bt8]] – LdCyp<br /> | ||
| + | **[[6l2b]] – LdCyp (mutant) <BR /> | ||
**[[2haq]] – LdCyp-A<br /> | **[[2haq]] – LdCyp-A<br /> | ||
**[[2hqj]] – Cyp – ''Leishmania major''<br /> | **[[2hqj]] – Cyp – ''Leishmania major''<br /> | ||
Current revision
3D Structures of Cyclophilin
Updated on 05-December-2022
