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Deaminase 3D structures

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(New page: == 3D Structures of deaminase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Cytidine deaminase **1r5t ...)
Current revision (11:24, 18 December 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
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*Cytidine deaminase
*Cytidine deaminase
 +
**[[6l08]] – CDA1 – ''Arabidopsis thaliana''<BR />
**[[1r5t]] – yCDA - yeast <BR />
**[[1r5t]] – yCDA - yeast <BR />
**[[2a8n]] – AtCDA – ''Agrobacterium tumefaciens'' <BR />
**[[2a8n]] – AtCDA – ''Agrobacterium tumefaciens'' <BR />
Line 16: Line 17:
**[[3r2n]] – CDA – ''Mycobacterium leprae'' <BR />
**[[3r2n]] – CDA – ''Mycobacterium leprae'' <BR />
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
 +
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR />
*''Cytidine deaminase complex with nucleoside''
*''Cytidine deaminase complex with nucleoside''
 +
**[[1mq0]] – hCDA + β-ribofuranosyl diazepinone - human <BR />
 +
**[[1zab]] – mCDA + deazauridine - mouse <BR />
 +
**[[2fr5]] – mCDA + tetrahydrouridine <BR />
 +
**[[2fr6]] – mCDA + cytidine + uridine <BR />
**[[1ctt]] – EcCDA + dihydro-pyrimidinone – ''Escherichia coli'' <BR />
**[[1ctt]] – EcCDA + dihydro-pyrimidinone – ''Escherichia coli'' <BR />
**[[1ctu]] – EcCDA + hydroxyl-dihydro-zebularine <BR />
**[[1ctu]] – EcCDA + hydroxyl-dihydro-zebularine <BR />
Line 25: Line 31:
**[[1jtk]] – BsCDA + tetrahydrodeoxyuridine - ''Bacillus subtilis'' <BR />
**[[1jtk]] – BsCDA + tetrahydrodeoxyuridine - ''Bacillus subtilis'' <BR />
**[[1uwz]], [[1ux0]], [[1ux1]] – BsCDA (mutant) + tetrahydrodeoxyuridine <BR />
**[[1uwz]], [[1ux0]], [[1ux1]] – BsCDA (mutant) + tetrahydrodeoxyuridine <BR />
-
**[[1mq0]] – hCDA + β-ribofuranosyl diazepinone - human <BR />
 
-
**[[1zab]] – mCDA + deazauridine - mouse <BR />
 
-
**[[2fr5]] – mCDA + tetrahydrouridine <BR />
 
-
**[[2fr6]] – mCDA + cytidine + uridine <BR />
 
**[[4eg2]] – CDA + uridine - ''Vibrio cholerae'' <BR />
**[[4eg2]] – CDA + uridine - ''Vibrio cholerae'' <BR />
*Cytosine deaminase
*Cytosine deaminase
-
**[[1k6w]] – EcCDDA <BR />
 
-
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR />
 
**[[1rb7]], [[1uaq]] – yCDDA <BR />
**[[1rb7]], [[1uaq]] – yCDDA <BR />
**[[1ysb]], [[1ysd]] – yCDDA (mutant)<BR />
**[[1ysb]], [[1ysd]] – yCDDA (mutant)<BR />
 +
**[[1k6w]] – EcCDDA <BR />
 +
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR />
*''Cytosine deaminase complex''
*''Cytosine deaminase complex''
 +
**[[1ox7]] – yCDDA + Zn <BR />
 +
**[[1p6o]] – yCDDA + pyrimidine derivative<BR />
 +
**[[2o3k]] – yCDDA (mutant) + pyrimidine derivative<BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
Line 45: Line 50:
**[[1rak]] – EcCDDA (mutant) + pyrimidine derivative<BR />
**[[1rak]] – EcCDDA (mutant) + pyrimidine derivative<BR />
**[[3o7u]] – EcCDDA + Zn + phosphono-cytosine<BR />
**[[3o7u]] – EcCDDA + Zn + phosphono-cytosine<BR />
-
**[[1ox7]] – yCDDA + Zn <BR />
+
**[[6k63]] – KpCDDA + Zn – ''Klebsiella pneumoniae''<BR />
-
**[[1p6o]] – yCDDA + pyrimidine derivative<BR />
+
**[[4r7w]], [[4r85]], [[4r88]] – KpCDDA + cytosine derivative<BR />
-
**[[2o3k]] – yCDDA (mutant) + pyrimidine derivative<BR />
+
-
**[[4r7w]], [[4r85]], [[4r88]] – KpCDDA + cytosine derivative – ''Klebsiella pneumoniae''<BR />
+
* Deoxycytidylate deaminase
* Deoxycytidylate deaminase
 +
**[[2w4l]] – hDCMP<BR />
 +
**[[5jfy]] – DCMP - cabbage<BR />
**[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR />
**[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR />
**[[1vq2]] – DCMP - Enterobacteria phage T4 <BR />
**[[1vq2]] – DCMP - Enterobacteria phage T4 <BR />
Line 57: Line 62:
**[[4p9d]] – CyDCMP + TMP <BR />
**[[4p9d]] – CyDCMP + TMP <BR />
**[[4p9e]] – CyDCMP <BR />
**[[4p9e]] – CyDCMP <BR />
-
**[[2w4l]] – hDCMP<BR />
 
-
**[[5jfy]] – DCMP - cabbage<BR />
 
*Guanine deaminase
*Guanine deaminase
-
**[[1tiy]], [[1wkq]] – BsGDA <BR />
 
**[[3e0l]] – hGDA<br />
**[[3e0l]] – hGDA<br />
 +
**[[6oh9]] – yGDA + Zn<br />
 +
**[[6ohb]], [[6ohc]] – EcGDA + Zn<br />
 +
**[[1tiy]], [[1wkq]] – BsGDA <BR />
*''Guanine deaminase complex with nucleoside''
*''Guanine deaminase complex with nucleoside''
 +
**[[2uz9]] – hGDA + xanthine <BR />
 +
**[[4aql]] – hGDA + valacyclovir <BR />
**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR />
**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR />
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR />
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR />
-
**[[4lc5]], [[4lcn]], [[4hrq]] – NeGDA + guanine derivative<BR />
+
**[[4lc5]], [[4lcn]], [[4hrq]], [[7c3t]], [[7c3u]] – NeGDA + guanine derivative<BR />
**[[4hrw]] – NeGDA (mutant) + guanine derivative<BR />
**[[4hrw]] – NeGDA (mutant) + guanine derivative<BR />
**[[4lco]] – NeGDA + ameline<BR />
**[[4lco]] – NeGDA + ameline<BR />
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**[[4ld2]] – NeGDA + cytidine<BR />
**[[4ld2]] – NeGDA + cytidine<BR />
**[[4ld4]] – NeGDA + cytosine<BR />
**[[4ld4]] – NeGDA + cytosine<BR />
-
**[[2uz9]] – hGDA + xanthine <BR />
+
 
-
**[[4aql]] – hGDA + valacyclovir <BR />
+
*Guanosine deaminase
 +
 
 +
**[[7dbf]] – AtGSDA + Zn<br />
 +
**[[7dc9]] – AtGSDA + Zn + GMP<br />
 +
**[[7dca]] – AtGSDA + Zn + xanthosine<br />
 +
**[[7dcb]] – AtGSDA + Zn + inosine<br />
 +
**[[7dm6]] – AtGSDA + Zn + crotonoside<br />
 +
**[[7dcw]] – AtGSDA + Zn + adeosine<br />
 +
**[[7dgc]], [[7dh1]], [[7dlc]], [[7dm5]], [[7dox]], [[7dow]], [[7doy]], [[7dpk]] – AtGSDA + Zn + guanosine derivative<br />
 +
**[[7dqn]], [[7w1q]] – AtGSDA (mutant) + Zn + guanosine derivative<br />
*Adenine deaminase
*Adenine deaminase
Line 89: Line 105:
**[[1dea]], [[1cd5]], [[1fs6]], [[1fsf]] – EcGPD <BR />
**[[1dea]], [[1cd5]], [[1fs6]], [[1fsf]] – EcGPD <BR />
**[[1jt9]] – EcGPD (mutant) <BR />
**[[1jt9]] – EcGPD (mutant) <BR />
 +
**[[1hor]] – EcGPD + deoxy-amino glucitol-phosphate<BR />
 +
**[[1hot]], [[1frz]], [[1fs5]], [[2wu1]] – EcGPD + N-acetyl-glucosamine-6-phosphate<BR />
 +
**[[1fqo]] – EcGPD + fructose 6-phosphate<BR />
**[[2ri0]] – SmGPD – ''Streptococcus mutans'' <BR />
**[[2ri0]] – SmGPD – ''Streptococcus mutans'' <BR />
 +
**[[2ri1]] – SmGPD + glucosamine-6-phosphate<BR />
**[[6nbg]] – KpGPD <BR />
**[[6nbg]] – KpGPD <BR />
**[[3hn6]] – GPD – ''Borrelia burgdorferi''<br />
**[[3hn6]] – GPD – ''Borrelia burgdorferi''<br />
Line 97: Line 117:
**[[4r7t]] – VcGPD <br />
**[[4r7t]] – VcGPD <br />
**[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR />
**[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR />
-
**[[1hor]] – EcGPD + deoxy-amino glucitol-phosphate<BR />
+
**[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR />
-
**[[1hot]], [[1frz]], [[1fs5]], [[2wu1]] – EcGPD + N-acetyl-glucosamine-6-phosphate<BR />
+
**[[7lqn]] – GPD –'' Haemophilus influenzae''<BR />
-
**[[1fqo]] – EcGPD + fructose 6-phosphate<BR />
+
-
**[[2ri1]] – SmGPD + glucosamine-6-phosphate<BR />
+
*1-aminocyclopropane-1-carboxylate (ACC) deaminase
*1-aminocyclopropane-1-carboxylate (ACC) deaminase
Line 147: Line 165:
**[[1wn5]], [[2z3g]] – AtBSD – ''Aspergillus terreus'' <BR />
**[[1wn5]], [[2z3g]] – AtBSD – ''Aspergillus terreus'' <BR />
**[[2z3j]] – AtBSD (mutant) <BR />
**[[2z3j]] – AtBSD (mutant) <BR />
-
**[[3oj6]] – BSD – Coccidioides immitis <BR />
 
**[[1wn6]] – AtBSD + blasticidin-S intermediate<BR />
**[[1wn6]] – AtBSD + blasticidin-S intermediate<BR />
**[[2z3h]] – AtBSD + deaminohydroxy blasticidin-S <BR />
**[[2z3h]] – AtBSD + deaminohydroxy blasticidin-S <BR />
**[[2z3i]] – AtBSD (mutant) + blasticidin-S <BR />
**[[2z3i]] – AtBSD (mutant) + blasticidin-S <BR />
 +
**[[3oj6]] – BSD – Coccidioides immitis <BR />
*Threonine deaminase
*Threonine deaminase
 +
**[[3iau]] – THD + PLP derivative – tomato<BR />
**[[1tdj]] – EcTHD + PLP <BR />
**[[1tdj]] – EcTHD + PLP <BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
-
**[[3iau]] – THD + PLP derivative – tomato<BR />
 
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
*L-serine deaminase
*L-serine deaminase
-
**[[1pwe]] – rLSD - rat <BR />
 
**[[1p5j]], [[2rkb]] – hLSD (mutant) + PLP <BR />
**[[1p5j]], [[2rkb]] – hLSD (mutant) + PLP <BR />
 +
**[[1pwe]] – rLSD - rat <BR />
**[[1pwh]] – rLSD + PLP derivative <BR />
**[[1pwh]] – rLSD + PLP derivative <BR />
Line 180: Line 198:
*2-aminomuconate deaminase
*2-aminomuconate deaminase
-
**[[6izh]] – PsAMD – <BR />
+
**[[6izh]] – PsAMD <BR />
 +
 
 +
*Aminofutalosine deaminase
 +
 
 +
**[[7lkj]] – HpAMD – ''Helicobacter pylori''<BR />
 +
**[[7lkk]] – HpAMD + inhibitor<BR />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of deaminase

Updated on 18-December-2022

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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