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7qb3
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 7qb3 is ON HOLD Authors: Andralojc, W., Gdaniec, Z. Description: Solution structure of a lanthanide-binding DNA aptamer [[Category: Unreleased Stru...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Solution structure of a lanthanide-binding DNA aptamer== | |
| + | <StructureSection load='7qb3' size='340' side='right'caption='[[7qb3]]' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[7qb3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QB3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QB3 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LU:LUTETIUM+(III)+ION'>LU</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qb3 OCA], [https://pdbe.org/7qb3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qb3 RCSB], [https://www.ebi.ac.uk/pdbsum/7qb3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qb3 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | In this contribution we report the high-resolution NMR structure of a recently identified lanthanide-binding aptamer (LnA). We demonstrate that the rigid lanthanide binding by LnA allows for the measurement of anisotropic paramagnetic NMR restraints which to date remain largely inaccessible for nucleic acids. One type of such restraints - pseudocontact shifts (PCS) induced by four different paramagnetic lanthanides - was extensively used throughout the current structure determination study and the measured PCS turned out to be exceptionally well reproduced by the final aptamer structure. This finding opens the perspective for a broader application of paramagnetic effects in NMR studies of nucleic acids through the transplantation of the binding site found in LnA into other DNA/RNA systems. | ||
| - | + | Solution Structure of a Lanthanide-binding DNA Aptamer Determined Using High Quality pseudocontact shift restraints.,Andralojc W, Wieruszewska J, Pasternak K, Gdaniec Z Chemistry. 2022 Nov 25;28(66):e202202114. doi: 10.1002/chem.202202114. Epub 2022 , Oct 1. PMID:36043489<ref>PMID:36043489</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Andralojc | + | <div class="pdbe-citations 7qb3" style="background-color:#fffaf0;"></div> |
| - | [[Category: Gdaniec | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Synthetic construct]] | ||
| + | [[Category: Andralojc W]] | ||
| + | [[Category: Gdaniec Z]] | ||
Current revision
Solution structure of a lanthanide-binding DNA aptamer
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