This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4may

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:06, 21 December 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_4may| PDB=4may | SCENE= }}
 
-
===Crystal structure of an immune complex===
 
-
==About this Structure==
+
==Crystal structure of an immune complex==
-
[[4may]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MAY OCA].
+
<StructureSection load='4may' size='340' side='right'caption='[[4may]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4may]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Herpesviridae_sp. Herpesviridae sp.] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MAY FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4may FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4may OCA], [https://pdbe.org/4may PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4may RCSB], [https://www.ebi.ac.uk/pdbsum/4may PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4may ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q30066_HUMAN Q30066_HUMAN]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Self-reactive CD4 T cells are thought to have a central role in the pathogenesis of many chronic inflammatory human diseases. Microbial peptides can activate self-reactive T cells, but the structural basis for such crossreactivity is not well understood. The Hy.1B11 T cell receptor (TCR) originates from a patient with multiple sclerosis and recognizes the self-antigen myelin basic protein. Here we report the structural mechanism of TCR crossreactivity with two distinct peptides from human pathogens. The structures show that a single TCR residue (CDR3alpha F95) makes the majority of contacts with the self-peptide and both microbial peptides (66.7-80.6%) due to a highly tilted TCR-binding topology on the peptide-MHC surface. Further, a neighbouring residue located on the same TCR loop (CDR3alpha E98) forms an energetically critical interaction with the MHC molecule. These data show how binding by a self-reactive TCR favors crossreactivity between self and microbial antigens.
 +
 
 +
Crossreactivity of a human autoimmune TCR is dominated by a single TCR loop.,Sethi DK, Gordo S, Schubert DA, Wucherpfennig KW Nat Commun. 2013 Oct 18;4:2623. doi: 10.1038/ncomms3623. PMID:24136005<ref>PMID:24136005</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4may" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Herpesviridae sp]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Sethi, D K.]]
+
[[Category: Large Structures]]
-
[[Category: Wucherpfennig, K W.]]
+
[[Category: Sethi DK]]
-
[[Category: Antigen presentation]]
+
[[Category: Wucherpfennig KW]]
-
[[Category: Autoimmunity]]
+
-
[[Category: Immune complex]]
+
-
[[Category: Immune system]]
+
-
[[Category: Multiple sclerosis]]
+

Current revision

Crystal structure of an immune complex

PDB ID 4may

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools