This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jiv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='1jiv' size='340' side='right'caption='[[1jiv]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
<StructureSection load='1jiv' size='340' side='right'caption='[[1jiv]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1jiv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1jiv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIV FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bgt|1bgt]], [[1bgu|1bgu]], [[1c3j|1c3j]], [[1qkj|1qkj]], [[1jiu|1jiu]], [[1jix|1jix]]</div></td></tr>
 
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiv OCA], [https://pdbe.org/1jiv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jiv RCSB], [https://www.ebi.ac.uk/pdbsum/1jiv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiv ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiv OCA], [https://pdbe.org/1jiv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jiv RCSB], [https://www.ebi.ac.uk/pdbsum/1jiv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiv ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/GSTB_BPT4 GSTB_BPT4]] Catalyzes the transfer of glucose (Glc) from uridine diphosphoglucose (UDP-Glc) to 5-hydroxymethylcytosine (5-HMC) in double-stranded DNA. Is involved in a DNA modification process to protect the phage genome against its own nucleases and the host restriction endonuclease system.
+
[https://www.uniprot.org/uniprot/GSTB_BPT4 GSTB_BPT4] Catalyzes the transfer of glucose (Glc) from uridine diphosphoglucose (UDP-Glc) to 5-hydroxymethylcytosine (5-HMC) in double-stranded DNA. Is involved in a DNA modification process to protect the phage genome against its own nucleases and the host restriction endonuclease system.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bpt4]]
+
[[Category: Escherichia virus T4]]
-
[[Category: DNA beta-glucosyltransferase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Aschke-Sonnenborn, U]]
+
[[Category: Aschke-Sonnenborn U]]
-
[[Category: Freemont, P S]]
+
[[Category: Freemont PS]]
-
[[Category: Janin, J]]
+
[[Category: Janin J]]
-
[[Category: Kurzeck, J]]
+
[[Category: Kurzeck J]]
-
[[Category: Lariviere, L]]
+
[[Category: Lariviere L]]
-
[[Category: Morera, S]]
+
[[Category: Morera S]]
-
[[Category: Ruger, W]]
+
[[Category: Ruger W]]
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Transferase]]
+

Revision as of 08:01, 18 January 2023

T4 phage BGT in complex with Mg2+ : Form II

PDB ID 1jiv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools