This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jly

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:02, 18 January 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1jly.gif|left|200px]]
 
-
{{Structure
+
==CRYSTAL STRUCTURE OF AMARANTHUS CAUDATUS AGGLUTININ==
-
|PDB= 1jly |SIZE=350|CAPTION= <scene name='initialview01'>1jly</scene>, resolution 2.2&Aring;
+
<StructureSection load='1jly' size='340' side='right'caption='[[1jly]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FOR:FORMYL GROUP'>FOR</scene>
+
<table><tr><td colspan='2'>[[1jly]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Amaranthus_caudatus Amaranthus caudatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JLY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JLY FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FOR:FORMYL+GROUP'>FOR</scene></td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jly OCA], [https://pdbe.org/1jly PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jly RCSB], [https://www.ebi.ac.uk/pdbsum/1jly PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jly ProSAT]</span></td></tr>
-
}}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q71QF2_AMACA Q71QF2_AMACA]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Amaranthus caudatus agglutinin contains a novel arrangement of four beta-trefoil domains. The sugar-binding site provides specificity for the carcinoma-associated T-antigen disaccharide even when 'masked' by other sugars.
-
'''CRYSTAL STRUCTURE OF AMARANTHUS CAUDATUS AGGLUTININ'''
+
Structure of benzyl T-antigen disaccharide bound to Amaranthus caudatus agglutinin.,Transue TR, Smith AK, Mo H, Goldstein IJ, Saper MA Nat Struct Biol. 1997 Oct;4(10):779-83. PMID:9334739<ref>PMID:9334739</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1jly" style="background-color:#fffaf0;"></div>
-
==Overview==
+
==See Also==
-
Amaranthus caudatus agglutinin contains a novel arrangement of four beta-trefoil domains. The sugar-binding site provides specificity for the carcinoma-associated T-antigen disaccharide even when 'masked' by other sugars.
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
1JLY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Amaranthus_caudatus Amaranthus caudatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JLY OCA].
+
__TOC__
-
 
+
</StructureSection>
-
==Reference==
+
-
Structure of benzyl T-antigen disaccharide bound to Amaranthus caudatus agglutinin., Transue TR, Smith AK, Mo H, Goldstein IJ, Saper MA, Nat Struct Biol. 1997 Oct;4(10):779-83. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9334739 9334739]
+
[[Category: Amaranthus caudatus]]
[[Category: Amaranthus caudatus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Goldstein, I J.]]
+
[[Category: Goldstein IJ]]
-
[[Category: Mo, H.]]
+
[[Category: Mo H]]
-
[[Category: Saper, M A.]]
+
[[Category: Saper MA]]
-
[[Category: Smith, A K.]]
+
[[Category: Smith AK]]
-
[[Category: Transue, T R.]]
+
[[Category: Transue TR]]
-
[[Category: FOR]]
+
-
[[Category: agglutinin]]
+
-
[[Category: bivalent]]
+
-
[[Category: lectin]]
+
-
[[Category: t-disaccharide homodimer]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:05:14 2008''
+

Current revision

CRYSTAL STRUCTURE OF AMARANTHUS CAUDATUS AGGLUTININ

PDB ID 1jly

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools