This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vk6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 25 January 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1vk6' size='340' side='right'caption='[[1vk6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='1vk6' size='340' side='right'caption='[[1vk6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1vk6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VK6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VK6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1vk6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VK6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VK6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vk6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vk6 OCA], [https://pdbe.org/1vk6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vk6 RCSB], [https://www.ebi.ac.uk/pdbsum/1vk6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vk6 ProSAT], [https://www.topsan.org/Proteins/JCSG/1vk6 TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NUDC, B3996 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vk6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vk6 OCA], [http://pdbe.org/1vk6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vk6 RCSB], [http://www.ebi.ac.uk/pdbsum/1vk6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vk6 ProSAT], [http://www.topsan.org/Proteins/JCSG/1vk6 TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NUDC_ECOLI NUDC_ECOLI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 21: Line 21:
==See Also==
==See Also==
-
*[[Inorganic pyrophosphatase|Inorganic pyrophosphatase]]
+
*[[Inorganic pyrophosphatase 3D structures|Inorganic pyrophosphatase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecoli]]
+
[[Category: Escherichia coli K-12]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
 
-
[[Category: Hydrolase]]
 
-
[[Category: Jcsg]]
 
-
[[Category: Nadh pyrophosphatase]]
 
-
[[Category: PSI, Protein structure initiative]]
 

Current revision

Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution

PDB ID 1vk6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools