This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2etd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:43, 25 January 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2etd.png|left|200px]]
 
-
<!--
+
==Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A resolution==
-
The line below this paragraph, containing "STRUCTURE_2etd", creates the "Structure Box" on the page.
+
<StructureSection load='2etd' size='340' side='right'caption='[[2etd]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2etd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ETD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ETD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2etd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2etd OCA], [https://pdbe.org/2etd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2etd RCSB], [https://www.ebi.ac.uk/pdbsum/2etd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2etd ProSAT], [https://www.topsan.org/Proteins/JCSG/2etd TOPSAN]</span></td></tr>
-
{{STRUCTURE_2etd| PDB=2etd | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of LEMA protein (tm0961) from THERMOTOGA MARITIMA at 2.28 A resolution===
+
[https://www.uniprot.org/uniprot/Q9X056_THEMA Q9X056_THEMA]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2ETD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ETD OCA].
+
<jmolCheckbox>
-
[[Category: Thermotoga maritima msb8]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/et/2etd_consurf.spt"</scriptWhenChecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Jcsg]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joint center for structural genomic]]
+
</jmolCheckbox>
-
[[Category: Lema protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2etd ConSurf].
-
[[Category: Protein structure initiative]]
+
<div style="clear:both"></div>
-
[[Category: Psi]]
+
__TOC__
-
[[Category: Structural genomic]]
+
</StructureSection>
-
[[Category: Tm0961]]
+
[[Category: Large Structures]]
-
 
+
[[Category: Thermotoga maritima MSB8]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:40:02 2008''
+

Current revision

Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A resolution

PDB ID 2etd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools