This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ffj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2ffj" [edit=sysop:move=sysop])
Current revision (06:44, 25 January 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ffj.png|left|200px]]
 
-
{{STRUCTURE_2ffj| PDB=2ffj | SCENE= }}
+
==CRYSTAL STRUCTURE OF a DUF89 family protein (AF1104) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.45 A RESOLUTION==
-
 
+
<StructureSection load='2ffj' size='340' side='right'caption='[[2ffj]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF a DUF89 family protein (AF1104) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.45 A RESOLUTION===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2ffj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FFJ FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ffj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ffj OCA], [https://pdbe.org/2ffj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ffj RCSB], [https://www.ebi.ac.uk/pdbsum/2ffj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ffj ProSAT], [https://www.topsan.org/Proteins/JCSG/2ffj TOPSAN]</span></td></tr>
-
[[2ffj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FFJ OCA].
+
</table>
-
[[Category: Archaeoglobus fulgidus]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/D89S1_ARCFU D89S1_ARCFU] Metal-dependent phosphatase with probable damage-control functions (By similarity). Could hydrolyze oxidatively damaged purine nucleotides or their biosynthetic intermediates (By similarity).[UniProtKB:O59272]
-
[[Category: Jcsg]]
+
== Evolutionary Conservation ==
-
[[Category: Joint center for structural genomic]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Protein structure initiative]]
+
Check<jmol>
-
[[Category: Psi-2]]
+
<jmolCheckbox>
-
[[Category: Structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ff/2ffj_consurf.spt"</scriptWhenChecked>
-
[[Category: Unknown function]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ffj ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Archaeoglobus fulgidus DSM 4304]]
 +
[[Category: Large Structures]]

Current revision

CRYSTAL STRUCTURE OF a DUF89 family protein (AF1104) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.45 A RESOLUTION

PDB ID 2ffj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools