This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2o2x
From Proteopedia
(Difference between revisions)
| (15 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2o2x.gif|left|200px]]<br /><applet load="2o2x" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2o2x, resolution 1.500Å" /> | ||
| - | '''Crystal structure of a putative phosphatase from HAD superfamily (NP_103874.1) from Mesorhizobium loti at 1.50 A resolution'''<br /> | ||
| - | == | + | ==Crystal structure of a putative had-like phosphatase (mll2559) from mesorhizobium loti at 1.50 A resolution== |
| - | + | <StructureSection load='2o2x' size='340' side='right'caption='[[2o2x]], [[Resolution|resolution]] 1.50Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2o2x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O2X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O2X FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o2x OCA], [https://pdbe.org/2o2x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o2x RCSB], [https://www.ebi.ac.uk/pdbsum/2o2x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o2x ProSAT], [https://www.topsan.org/Proteins/JCSG/2o2x TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/GMHBB_RHILO GMHBB_RHILO] Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate (beta-HBP) intermediate into D-glycero-beta-D-manno-heptose 1-phosphate by removing the phosphate group at the C-7 position.<ref>PMID:20050615</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o2/2o2x_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o2x ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Mesorhizobium loti]] | [[Category: Mesorhizobium loti]] | ||
| - | [[Category: Single protein]] | ||
| - | [[Category: JCSG, Joint Center for Structural Genomics.]] | ||
| - | [[Category: GOL]] | ||
| - | [[Category: hypothetical protein]] | ||
| - | [[Category: jcsg]] | ||
| - | [[Category: joint center for structural genomics]] | ||
| - | [[Category: np_103874 1]] | ||
| - | [[Category: protein structure initiative]] | ||
| - | [[Category: psi-2]] | ||
| - | [[Category: structural genomics]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:13:49 2008'' | ||
Current revision
Crystal structure of a putative had-like phosphatase (mll2559) from mesorhizobium loti at 1.50 A resolution
| |||||||||||
