This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2oqm
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2oqm" size="350" color="white" frame="true" align="right" spinBox="true" caption="2oqm, resolution 1.83Å" /> '''Crystal structure of...) |
|||
| (15 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2oqm.gif|left|200px]]<br /><applet load="2oqm" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2oqm, resolution 1.83Å" /> | ||
| - | '''Crystal structure of a DNA damage-inducible protein from DinB family (YP_561575.1) from Shewanella denitrificans OS-217 at 1.83 A resolution'''<br /> | ||
| - | == | + | ==Crystal structure of a dinb family member protein (sden_0562) from shewanella denitrificans at 1.83 A resolution== |
| - | + | <StructureSection load='2oqm' size='340' side='right'caption='[[2oqm]], [[Resolution|resolution]] 1.83Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2oqm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_denitrificans Shewanella denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OQM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OQM FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oqm OCA], [https://pdbe.org/2oqm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oqm RCSB], [https://www.ebi.ac.uk/pdbsum/2oqm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oqm ProSAT], [https://www.topsan.org/Proteins/JCSG/2oqm TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q12RS4_SHEDO Q12RS4_SHEDO] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oq/2oqm_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oqm ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Shewanella denitrificans]] | [[Category: Shewanella denitrificans]] | ||
| - | [[Category: Single protein]] | ||
| - | [[Category: JCSG, Joint.Center.for.Structural.Genomics.]] | ||
| - | [[Category: CL]] | ||
| - | [[Category: EDO]] | ||
| - | [[Category: FMT]] | ||
| - | [[Category: hypothetical protein]] | ||
| - | [[Category: jcsg]] | ||
| - | [[Category: joint center for structural genomics]] | ||
| - | [[Category: protein structure initiative]] | ||
| - | [[Category: psi-2]] | ||
| - | [[Category: structural genomics]] | ||
| - | [[Category: yp_561575.1]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:15:01 2008'' | ||
Current revision
Crystal structure of a dinb family member protein (sden_0562) from shewanella denitrificans at 1.83 A resolution
| |||||||||||
