This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p2s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:48, 25 January 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p2s.gif|left|200px]]<br /><applet load="2p2s" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p2s, resolution 1.250&Aring;" />
 
-
'''Crystal structure of putative oxidoreductase (YP_050235.1) from Erwinia carotovora atroseptica SCRI1043 at 1.25 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of putative oxidoreductase (YP_050235.1) from Erwinia carotovora atroseptica SCRI1043 at 1.25 A resolution==
-
2P2S is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Erwinia_carotovora_subsp._atroseptica_scri1043 Erwinia carotovora subsp. atroseptica scri1043] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=ACT:'>ACT</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P2S OCA].
+
<StructureSection load='2p2s' size='340' side='right'caption='[[2p2s]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
-
[[Category: Erwinia carotovora subsp. atroseptica scri1043]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2p2s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_atrosepticum_SCRI1043 Pectobacterium atrosepticum SCRI1043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P2S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P2S FirstGlance]. <br>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: ACT]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p2s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p2s OCA], [https://pdbe.org/2p2s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p2s RCSB], [https://www.ebi.ac.uk/pdbsum/2p2s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p2s ProSAT], [https://www.topsan.org/Proteins/JCSG/2p2s TOPSAN]</span></td></tr>
-
[[Category: EDO]]
+
</table>
-
[[Category: MG]]
+
== Function ==
-
[[Category: jcsg]]
+
[https://www.uniprot.org/uniprot/Q6D5A0_PECAS Q6D5A0_PECAS]
-
[[Category: joint center for structural genomics]]
+
== Evolutionary Conservation ==
-
[[Category: protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: psi-2]]
+
Check<jmol>
-
[[Category: putative]]
+
<jmolCheckbox>
-
[[Category: structural genomics]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p2/2p2s_consurf.spt"</scriptWhenChecked>
-
[[Category: yp_050235 1]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:25:16 2008''
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p2s ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pectobacterium atrosepticum SCRI1043]]

Current revision

Crystal structure of putative oxidoreductase (YP_050235.1) from Erwinia carotovora atroseptica SCRI1043 at 1.25 A resolution

PDB ID 2p2s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools