This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qpx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:50, 25 January 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qpx.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of putative metal-dependent hydrolase (YP_805737.1) from Lactobacillus casei ATCC 334 at 1.40 A resolution==
-
The line below this paragraph, containing "STRUCTURE_2qpx", creates the "Structure Box" on the page.
+
<StructureSection load='2qpx' size='340' side='right'caption='[[2qpx]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2qpx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacticaseibacillus_paracasei_ATCC_334 Lacticaseibacillus paracasei ATCC 334]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QPX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qpx OCA], [https://pdbe.org/2qpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qpx RCSB], [https://www.ebi.ac.uk/pdbsum/2qpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qpx ProSAT], [https://www.topsan.org/Proteins/JCSG/2qpx TOPSAN]</span></td></tr>
-
{{STRUCTURE_2qpx| PDB=2qpx | SCENE= }}
+
</table>
-
 
+
== Function ==
-
'''Crystal structure of putative metal-dependent hydrolase (YP_805737.1) from Lactobacillus casei ATCC 334 at 1.40 A resolution'''
+
[https://www.uniprot.org/uniprot/Q03BX7_LACP3 Q03BX7_LACP3]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2QPX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_casei_atcc_334 Lactobacillus casei atcc 334]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QPX OCA].
+
<jmolCheckbox>
-
[[Category: Lactobacillus casei atcc 334]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qp/2qpx_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Jcsg]]
+
</jmolCheckbox>
-
[[Category: Joint center for structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qpx ConSurf].
-
[[Category: Protein structure initiative]]
+
<div style="clear:both"></div>
-
[[Category: Psi-2]]
+
__TOC__
-
[[Category: Putative metal-dependent hydrolase]]
+
</StructureSection>
-
[[Category: Structural genomic]]
+
[[Category: Lacticaseibacillus paracasei ATCC 334]]
-
[[Category: Unknown function]]
+
[[Category: Large Structures]]
-
[[Category: Yp_805737 1]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 15:23:14 2008''
+

Current revision

Crystal structure of putative metal-dependent hydrolase (YP_805737.1) from Lactobacillus casei ATCC 334 at 1.40 A resolution

PDB ID 2qpx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qpx"
Personal tools