This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ccg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3ccg" size="350" color="white" frame="true" align="right" spinBox="true" caption="3ccg, resolution 1.500&Aring;" /> '''Crystal structure o...)
Current revision (11:29, 1 February 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ccg.jpg|left|200px]]<br /><applet load="3ccg" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3ccg, resolution 1.500&Aring;" />
 
-
'''Crystal structure of predicted HD superfamily hydrolase involved in NAD metabolism (NP_347894.1) from Clostridium acetobutylicum at 1.50 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of predicted HD superfamily hydrolase involved in NAD metabolism (NP_347894.1) from Clostridium acetobutylicum at 1.50 A resolution==
-
3CCG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824] with <scene name='pdbligand=FE:'>FE</scene> and <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Fe+Binding+Site+For+Residue+A+190'>AC1</scene>, <scene name='pdbsite=AC2:Fe+Binding+Site+For+Residue+A+191'>AC2</scene> and <scene name='pdbsite=AC3:Po4+Binding+Site+For+Residue+A+192'>AC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CCG OCA].
+
<StructureSection load='3ccg' size='340' side='right'caption='[[3ccg]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
[[Category: Clostridium acetobutylicum atcc 824]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3ccg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CCG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CCG FirstGlance]. <br>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: FE]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ccg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ccg OCA], [https://pdbe.org/3ccg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ccg RCSB], [https://www.ebi.ac.uk/pdbsum/3ccg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ccg ProSAT], [https://www.topsan.org/Proteins/JCSG/3ccg TOPSAN]</span></td></tr>
-
[[Category: PO4]]
+
</table>
-
[[Category: hd domain]]
+
== Function ==
-
[[Category: jcsg]]
+
[https://www.uniprot.org/uniprot/Q97JL1_CLOAB Q97JL1_CLOAB]
-
[[Category: joint center for structural genomic]]
+
== Evolutionary Conservation ==
-
[[Category: np_347894 1]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: predicted hd superfamily hydrolase involved in nad metabolism]]
+
Check<jmol>
-
[[Category: protein structure initiative]]
+
<jmolCheckbox>
-
[[Category: psi-2]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/3ccg_consurf.spt"</scriptWhenChecked>
-
[[Category: structural genomic]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Mar 14 09:41:03 2008''
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ccg ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Clostridium acetobutylicum ATCC 824]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of predicted HD superfamily hydrolase involved in NAD metabolism (NP_347894.1) from Clostridium acetobutylicum at 1.50 A resolution

PDB ID 3ccg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools