This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ccf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3ccf" size="350" color="white" frame="true" align="right" spinBox="true" caption="3ccf, resolution 1.900&Aring;" /> '''Crystal structure o...)
Current revision (11:29, 1 February 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ccf.jpg|left|200px]]<br /><applet load="3ccf" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3ccf, resolution 1.900&Aring;" />
 
-
'''Crystal structure of putative methyltransferase (YP_321342.1) from Anabaena variabilis ATCC 29413 at 1.90 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of putative methyltransferase (YP_321342.1) from Anabaena variabilis ATCC 29413 at 1.90 A resolution==
-
3CCF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Anabaena_variabilis_atcc_29413 Anabaena variabilis atcc 29413] with <scene name='pdbligand=BEZ:'>BEZ</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Trans-aconitate_2-methyltransferase Trans-aconitate 2-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.144 2.1.1.144] Known structural/functional Sites: <scene name='pdbsite=AC1:Bez+Binding+Site+For+Residue+A+261'>AC1</scene> and <scene name='pdbsite=AC2:Bez+Binding+Site+For+Residue+B+261'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CCF OCA].
+
<StructureSection load='3ccf' size='340' side='right'caption='[[3ccf]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Anabaena variabilis atcc 29413]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3ccf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichormus_variabilis_ATCC_29413 Trichormus variabilis ATCC 29413]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CCF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CCF FirstGlance]. <br>
-
[[Category: Trans-aconitate 2-methyltransferase]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ccf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ccf OCA], [https://pdbe.org/3ccf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ccf RCSB], [https://www.ebi.ac.uk/pdbsum/3ccf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ccf ProSAT], [https://www.topsan.org/Proteins/JCSG/3ccf TOPSAN]</span></td></tr>
-
[[Category: BEZ]]
+
</table>
-
[[Category: jcsg]]
+
== Function ==
-
[[Category: joint center for structural genomic]]
+
[https://www.uniprot.org/uniprot/Q3MEY9_TRIV2 Q3MEY9_TRIV2]
-
[[Category: protein structure initiative]]
+
== Evolutionary Conservation ==
-
[[Category: psi-2]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: putative methyltransferase]]
+
Check<jmol>
-
[[Category: structural genomic]]
+
<jmolCheckbox>
-
[[Category: yp_321342 1]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/3ccf_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Mar 14 09:40:59 2008''
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ccf ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Trichormus variabilis ATCC 29413]]

Current revision

Crystal structure of putative methyltransferase (YP_321342.1) from Anabaena variabilis ATCC 29413 at 1.90 A resolution

PDB ID 3ccf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ccf"
Personal tools