This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ce9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3ce9" size="350" color="white" frame="true" align="right" spinBox="true" caption="3ce9, resolution 2.370&Aring;" /> '''Crystal structure o...)
Current revision (11:29, 1 February 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ce9.jpg|left|200px]]<br /><applet load="3ce9" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3ce9, resolution 2.370&Aring;" />
 
-
'''Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==
-
3CE9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=EDO:'>EDO</scene> and <scene name='pdbligand=PEG:'>PEG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+A+400'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Residue+B+400'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Residue+C+400'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Residue+D+400'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+C+401'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+D+401'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+401'>AC7</scene>, <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+402'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+A+403'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+B+401'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+C+402'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+C+403'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+C+404'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+C+405'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+C+406'>BC6</scene>, <scene name='pdbsite=BC7:Edo+Binding+Site+For+Residue+D+402'>BC7</scene>, <scene name='pdbsite=BC8:Edo+Binding+Site+For+Residue+D+403'>BC8</scene>, <scene name='pdbsite=BC9:Edo+Binding+Site+For+Residue+D+404'>BC9</scene>, <scene name='pdbsite=CC1:Edo+Binding+Site+For+Residue+D+405'>CC1</scene>, <scene name='pdbsite=CC2:Peg+Binding+Site+For+Residue+A+404'>CC2</scene> and <scene name='pdbsite=CC3:Peg+Binding+Site+For+Residue+D+406'>CC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].
+
<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
-
[[Category: Clostridium acetobutylicum atcc 824]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: EDO]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [https://pdbe.org/3ce9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
-
[[Category: PEG]]
+
</table>
-
[[Category: ZN]]
+
== Function ==
-
[[Category: 3-dehydroquinate synthase]]
+
[https://www.uniprot.org/uniprot/Q97IL4_CLOAB Q97IL4_CLOAB]
-
[[Category: glycerol dehydrogenase]]
+
== Evolutionary Conservation ==
-
[[Category: jcsg]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: joint center for structural genomic]]
+
Check<jmol>
-
[[Category: np_348253 1]]
+
<jmolCheckbox>
-
[[Category: oxidoreductase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ce9_consurf.spt"</scriptWhenChecked>
-
[[Category: protein structure initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: psi-2]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: structural genomic]]
+
</jmolCheckbox>
-
 
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ce9 ConSurf].
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Mar 14 09:41:29 2008''
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Clostridium acetobutylicum ATCC 824]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution

PDB ID 3ce9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ce9"
Personal tools