This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cjd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3cjd" [edit=sysop:move=sysop])
Current revision (11:30, 1 February 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cjd.png|left|200px]]
 
-
{{STRUCTURE_3cjd| PDB=3cjd | SCENE= }}
+
==Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution==
-
 
+
<StructureSection load='3cjd' size='340' side='right'caption='[[3cjd]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
-
===Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3cjd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Jannaschia_sp._CCS1 Jannaschia sp. CCS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CJD FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=STE:STEARIC+ACID'>STE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cjd OCA], [https://pdbe.org/3cjd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cjd RCSB], [https://www.ebi.ac.uk/pdbsum/3cjd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cjd ProSAT], [https://www.topsan.org/Proteins/JCSG/3cjd TOPSAN]</span></td></tr>
-
[[3cjd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Jannaschia_sp._ccs1 Jannaschia sp. ccs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJD OCA].
+
</table>
-
[[Category: Jannaschia sp. ccs1]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/Q28N01_JANSC Q28N01_JANSC]
-
[[Category: Dna-binding]]
+
== Evolutionary Conservation ==
-
[[Category: Jcsg]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joint center for structural genomic]]
+
Check<jmol>
-
[[Category: Protein structure initiative]]
+
<jmolCheckbox>
-
[[Category: Psi-2]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cj/3cjd_consurf.spt"</scriptWhenChecked>
-
[[Category: Putative tetr transcriptional regulator]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Structural genomic]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Transcription regulation]]
+
</jmolCheckbox>
-
[[Category: Transcription regulator]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cjd ConSurf].
-
[[Category: Yp_510936 1]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Jannaschia sp. CCS1]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution

PDB ID 3cjd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools