This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cje

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:30, 1 February 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cje.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of an osmc-like hydroperoxide resistance protein (jann_2040) from jannaschia sp. ccs1 at 1.70 A resolution==
-
|PDB= 3cje |SIZE=350|CAPTION= <scene name='initialview01'>3cje</scene>, resolution 1.700&Aring;
+
<StructureSection load='3cje' size='340' side='right'caption='[[3cje]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Residue+A+167'>AC1</scene>, <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+168'>AC2</scene>, <scene name='pdbsite=AC3:Gol+Binding+Site+For+Residue+A+169'>AC3</scene>, <scene name='pdbsite=AC4:Gol+Binding+Site+For+Residue+A+170'>AC4</scene>, <scene name='pdbsite=AC5:Gol+Binding+Site+For+Residue+A+171'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Residue+A+172'>AC6</scene>, <scene name='pdbsite=AC7:Gol+Binding+Site+For+Residue+A+173'>AC7</scene>, <scene name='pdbsite=AC8:Gol+Binding+Site+For+Residue+A+174'>AC8</scene> and <scene name='pdbsite=AC9:Gol+Binding+Site+For+Residue+A+175'>AC9</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
+
<table><tr><td colspan='2'>[[3cje]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Jannaschia_sp._CCS1 Jannaschia sp. CCS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CJE FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
|GENE= YP_509982.1, Jann_2040 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290400 Jannaschia sp. CCS1])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cje FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cje OCA], [https://pdbe.org/3cje PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cje RCSB], [https://www.ebi.ac.uk/pdbsum/3cje PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cje ProSAT], [https://www.topsan.org/Proteins/JCSG/3cje TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02566 OsmC]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cje FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cje OCA], [http://www.ebi.ac.uk/pdbsum/3cje PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cje RCSB]</span>
+
[https://www.uniprot.org/uniprot/Q28QQ5_JANSC Q28QQ5_JANSC]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of OsmC-like hydroperoxide resistance protein (YP_509982.1) from Jannaschia sp. CCS1 at 1.70 A resolution'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cj/3cje_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
3CJE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Jannaschia_sp._ccs1 Jannaschia sp. ccs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJE OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Jannaschia sp. ccs1]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cje ConSurf].
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: jcsg]]
+
__TOC__
-
[[Category: joint center for structural genomic]]
+
</StructureSection>
-
[[Category: osmc-like hydroperoxide resistance protein]]
+
[[Category: Jannaschia sp. CCS1]]
-
[[Category: protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
[[Category: yp_509982 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:32:25 2008''
+

Current revision

Crystal structure of an osmc-like hydroperoxide resistance protein (jann_2040) from jannaschia sp. ccs1 at 1.70 A resolution

PDB ID 3cje

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cje"
Personal tools