This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cjy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:30, 1 February 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cjy.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of putative thioesterase (YP_496845.1) from Novosphingobium aromaticivorans DSM 12444 at 1.70 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3cjy", creates the "Structure Box" on the page.
+
<StructureSection load='3cjy' size='340' side='right'caption='[[3cjy]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3cjy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_DSM_12444 Novosphingobium aromaticivorans DSM 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CJY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cjy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cjy OCA], [https://pdbe.org/3cjy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cjy RCSB], [https://www.ebi.ac.uk/pdbsum/3cjy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cjy ProSAT], [https://www.topsan.org/Proteins/JCSG/3cjy TOPSAN]</span></td></tr>
-
{{STRUCTURE_3cjy| PDB=3cjy | SCENE= }}
+
</table>
-
 
+
== Function ==
-
'''Crystal structure of putative thioesterase (YP_496845.1) from Novosphingobium aromaticivorans DSM 12444 at 1.70 A resolution'''
+
[https://www.uniprot.org/uniprot/Q2G812_NOVAD Q2G812_NOVAD]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3CJY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_dsm_12444 Novosphingobium aromaticivorans dsm 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CJY OCA].
+
<jmolCheckbox>
-
[[Category: Novosphingobium aromaticivorans dsm 12444]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cj/3cjy_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Hydrolase]]
+
</jmolCheckbox>
-
[[Category: Jcsg]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cjy ConSurf].
-
[[Category: Joint center for structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: Protein structure initiative]]
+
__TOC__
-
[[Category: Psi-2]]
+
</StructureSection>
-
[[Category: Putative thioesterase]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Novosphingobium aromaticivorans DSM 12444]]
-
[[Category: Yp_496845 1]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 21:51:16 2008''
+

Current revision

Crystal structure of putative thioesterase (YP_496845.1) from Novosphingobium aromaticivorans DSM 12444 at 1.70 A resolution

PDB ID 3cjy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cjy"
Personal tools