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3clo

From Proteopedia

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(New page: 200px {{Structure |PDB= 3clo |SIZE=350|CAPTION= <scene name='initialview01'>3clo</scene>, resolution 2.040&Aring; |SITE= <scene name='pdbsite=AC1:Na+Binding+Site+...)
Current revision (11:30, 1 February 2023) (edit) (undo)
 
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[[Image:3clo.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of putative transcriptional regulator containing a LuxR DNA binding domain (NP_811094.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.04 A resolution==
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|PDB= 3clo |SIZE=350|CAPTION= <scene name='initialview01'>3clo</scene>, resolution 2.040&Aring;
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<StructureSection load='3clo' size='340' side='right'caption='[[3clo]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+C+258'>AC1</scene>, <scene name='pdbsite=AC2:Na+Binding+Site+For+Residue+C+259'>AC2</scene>, <scene name='pdbsite=AC3:Cl+Binding+Site+For+Residue+C+260'>AC3</scene>, <scene name='pdbsite=AC4:Cl+Binding+Site+For+Residue+B+258'>AC4</scene>, <scene name='pdbsite=AC5:Cl+Binding+Site+For+Residue+A+258'>AC5</scene>, <scene name='pdbsite=AC6:Cl+Binding+Site+For+Residue+A+259'>AC6</scene>, <scene name='pdbsite=AC7:Cl+Binding+Site+For+Residue+A+260'>AC7</scene>, <scene name='pdbsite=AC8:Cl+Binding+Site+For+Residue+C+261'>AC8</scene>, <scene name='pdbsite=AC9:Cl+Binding+Site+For+Residue+B+259'>AC9</scene> and <scene name='pdbsite=BC1:Gol+Binding+Site+For+Residue+C+262'>BC1</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
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<table><tr><td colspan='2'>[[3clo]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CLO FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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|GENE= NP_811094.1, BT_2181 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3clo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3clo OCA], [https://pdbe.org/3clo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3clo RCSB], [https://www.ebi.ac.uk/pdbsum/3clo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3clo ProSAT], [https://www.topsan.org/Proteins/JCSG/3clo TOPSAN]</span></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00421 HTH_LUXR]</span>
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3clo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3clo OCA], [http://www.ebi.ac.uk/pdbsum/3clo PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3clo RCSB]</span>
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[https://www.uniprot.org/uniprot/Q8A5Q7_BACTN Q8A5Q7_BACTN]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of putative transcriptional regulator containing a LuxR DNA binding domain (NP_811094.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.04 A resolution'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cl/3clo_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3CLO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLO OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Bacteria]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3clo ConSurf].
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[[Category: JCSG, Joint Center for Structural Genomics.]]
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<div style="clear:both"></div>
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[[Category: bacterial regulatory protein]]
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__TOC__
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[[Category: dna-binding]]
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</StructureSection>
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[[Category: jcsg]]
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[[Category: Bacteroides thetaiotaomicron VPI-5482]]
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[[Category: joint center for structural genomic]]
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[[Category: Large Structures]]
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[[Category: luxr family]]
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[[Category: np_811094 1]]
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[[Category: protein structure initiative]]
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[[Category: psi-2]]
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[[Category: putative transcriptional regulator containing a luxr dna binding domain]]
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[[Category: structural genomic]]
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[[Category: transcription regulation]]
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[[Category: transcription regulator]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 12:00:25 2008''
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Current revision

Crystal structure of putative transcriptional regulator containing a LuxR DNA binding domain (NP_811094.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.04 A resolution

PDB ID 3clo

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