This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ct9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:30, 1 February 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ct9.png|left|200px]]
 
-
{{STRUCTURE_3ct9| PDB=3ct9 | SCENE= }}
+
==Crystal structure of a putative zinc peptidase (NP_812461.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.31 A resolution==
-
 
+
<StructureSection load='3ct9' size='340' side='right'caption='[[3ct9]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
-
===Crystal structure of a putative zinc peptidase (NP_812461.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.31 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ct9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CT9 FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ct9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ct9 OCA], [https://pdbe.org/3ct9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ct9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ct9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ct9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ct9 TOPSAN]</span></td></tr>
-
[[3ct9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CT9 OCA].
+
</table>
-
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/Q8A1V9_BACTN Q8A1V9_BACTN]
-
[[Category: A putative zinc peptidase]]
+
== Evolutionary Conservation ==
-
[[Category: Hydrolase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Jcsg]]
+
Check<jmol>
-
[[Category: Joint center for structural genomic]]
+
<jmolCheckbox>
-
[[Category: Np_812461 1]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ct/3ct9_consurf.spt"</scriptWhenChecked>
-
[[Category: Peptidase family m20/m25/m40]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Psi-2]]
+
</jmolCheckbox>
-
[[Category: Structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ct9 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of a putative zinc peptidase (NP_812461.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.31 A resolution

PDB ID 3ct9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools