This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fdh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:36, 1 February 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3fdh.png|left|200px]]
 
-
{{STRUCTURE_3fdh| PDB=3fdh | SCENE= }}
+
==Crystal structure of a susd/ragb family protein (bt_2033) from bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution==
-
 
+
<StructureSection load='3fdh' size='340' side='right'caption='[[3fdh]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
===Crystal structure of a susd/ragb family protein (bt_2033) from bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3fdh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FDH FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdh OCA], [https://pdbe.org/3fdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fdh RCSB], [https://www.ebi.ac.uk/pdbsum/3fdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdh ProSAT], [https://www.topsan.org/Proteins/JCSG/3fdh TOPSAN]</span></td></tr>
-
[[3fdh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDH OCA].
+
</table>
-
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/Q8A653_BACTN Q8A653_BACTN]
-
[[Category: Jcsg]]
+
== Evolutionary Conservation ==
-
[[Category: Joint center for structural genomic]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Protein structure initiative]]
+
Check<jmol>
-
[[Category: Psi-2]]
+
<jmolCheckbox>
-
[[Category: Structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdh_consurf.spt"</scriptWhenChecked>
-
[[Category: Sugar binding protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fdh ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of a susd/ragb family protein (bt_2033) from bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution

PDB ID 3fdh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools