This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fmc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:38, 1 February 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==CRYSTAL STRUCTURE OF a putative succinylglutamate desuccinylase / aspartoacylase family protein (SAMA_0604) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.80 A RESOLUTION==
==CRYSTAL STRUCTURE OF a putative succinylglutamate desuccinylase / aspartoacylase family protein (SAMA_0604) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.80 A RESOLUTION==
-
<StructureSection load='3fmc' size='340' side='right' caption='[[3fmc]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3fmc' size='340' side='right'caption='[[3fmc]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3fmc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sheam Sheam]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FMC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FMC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3fmc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_amazonensis_SB2B Shewanella amazonensis SB2B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FMC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fmc OCA], [https://pdbe.org/3fmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fmc RCSB], [https://www.ebi.ac.uk/pdbsum/3fmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fmc ProSAT], [https://www.topsan.org/Proteins/JCSG/3fmc TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Sama_0604, YP_926482.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=326297 SHEAM])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fmc OCA], [http://pdbe.org/3fmc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fmc RCSB], [http://www.ebi.ac.uk/pdbsum/3fmc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fmc ProSAT], [http://www.topsan.org/Proteins/JCSG/3fmc TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A1S356_SHEAM A1S356_SHEAM]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/3fmc_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/3fmc_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 21: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Sheam]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Shewanella amazonensis SB2B]]
-
[[Category: Hydrolase]]
+
-
[[Category: Jcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Putative succinylglutamate desuccinylase / aspartoacylase]]
+

Current revision

CRYSTAL STRUCTURE OF a putative succinylglutamate desuccinylase / aspartoacylase family protein (SAMA_0604) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.80 A RESOLUTION

PDB ID 3fmc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools