This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gi7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:39, 1 February 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3gi7.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3gi7", creates the "Structure Box" on the page.
+
<StructureSection load='3gi7' size='340' side='right'caption='[[3gi7]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gi7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GI7 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gi7 OCA], [https://pdbe.org/3gi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gi7 RCSB], [https://www.ebi.ac.uk/pdbsum/3gi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gi7 ProSAT], [https://www.topsan.org/Proteins/JCSG/3gi7 TOPSAN]</span></td></tr>
-
{{STRUCTURE_3gi7| PDB=3gi7 | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of secreted protein of unknown function (DUF1311) (NP_742474.1) from Pseudomonas putida KT2440 at 1.85 A resolution===
+
[https://www.uniprot.org/uniprot/Q88R27_PSEPK Q88R27_PSEPK]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3GI7 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_putida_kt2440 Pseudomonas putida kt2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GI7 OCA].
+
<jmolCheckbox>
-
[[Category: Pseudomonas putida kt2440]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gi/3gi7_consurf.spt"</scriptWhenChecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Jcsg]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joint center for structural genomic]]
+
</jmolCheckbox>
-
[[Category: Np_742474 1]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gi7 ConSurf].
-
[[Category: Protein structure initiative]]
+
<div style="clear:both"></div>
-
[[Category: Psi-2]]
+
__TOC__
-
[[Category: Structural genomic]]
+
</StructureSection>
-
[[Category: Unknown function]]
+
[[Category: Large Structures]]
-
 
+
[[Category: Pseudomonas putida KT2440]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 2 16:14:30 2009''
+

Current revision

Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 A resolution

PDB ID 3gi7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gi7"
Personal tools