This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3grd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3grd", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (11:39, 1 February 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3grd.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of NTF2-superfamily protein with unknown function (NP_977240.1) from BACILLUS CEREUS ATCC 10987 at 1.25 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3grd", creates the "Structure Box" on the page.
+
<StructureSection load='3grd' size='340' side='right'caption='[[3grd]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3grd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_10987 Bacillus cereus ATCC 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GRD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3grd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3grd OCA], [https://pdbe.org/3grd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3grd RCSB], [https://www.ebi.ac.uk/pdbsum/3grd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3grd ProSAT], [https://www.topsan.org/Proteins/JCSG/3grd TOPSAN]</span></td></tr>
-
{{STRUCTURE_3grd| PDB=3grd | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of NTF2-superfamily protein with unknown function (NP_977240.1) from BACILLUS CEREUS ATCC 10987 at 1.25 A resolution===
+
[https://www.uniprot.org/uniprot/Q73CZ7_BACC1 Q73CZ7_BACC1]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3GRD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_10987 Bacillus cereus atcc 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GRD OCA].
+
<jmolCheckbox>
-
[[Category: Bacillus cereus atcc 10987]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/3grd_consurf.spt"</scriptWhenChecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Jcsg]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joint center for structural genomic]]
+
</jmolCheckbox>
-
[[Category: Np_977240 1]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3grd ConSurf].
-
[[Category: Ntf2-superfamily protein with unknown function]]
+
<div style="clear:both"></div>
-
[[Category: Protein structure initiative]]
+
__TOC__
-
[[Category: Psi-2]]
+
</StructureSection>
-
[[Category: Structural genomic]]
+
[[Category: Bacillus cereus ATCC 10987]]
-
[[Category: Unknown function]]
+
[[Category: Large Structures]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 9 12:32:07 2009''
+

Current revision

Crystal structure of NTF2-superfamily protein with unknown function (NP_977240.1) from BACILLUS CEREUS ATCC 10987 at 1.25 A resolution

PDB ID 3grd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3grd"
Personal tools