This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gza

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:39, 1 February 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gza.png|left|200px]]
 
-
{{STRUCTURE_3gza| PDB=3gza | SCENE= }}
+
==Crystal structure of putative alpha-L-fucosidase (NP_812709.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.60 A resolution==
-
 
+
<StructureSection load='3gza' size='340' side='right'caption='[[3gza]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
===Crystal structure of putative alpha-L-fucosidase (NP_812709.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.60 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gza]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GZA FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gza FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gza OCA], [https://pdbe.org/3gza PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gza RCSB], [https://www.ebi.ac.uk/pdbsum/3gza PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gza ProSAT], [https://www.topsan.org/Proteins/JCSG/3gza TOPSAN]</span></td></tr>
-
[[3gza]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZA OCA].
+
</table>
-
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/Q8A169_BACTN Q8A169_BACTN]
-
[[Category: Hydrolase]]
+
== Evolutionary Conservation ==
-
[[Category: Jcsg]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joint center for structural genomic]]
+
Check<jmol>
-
[[Category: Np_812709 1]]
+
<jmolCheckbox>
-
[[Category: Protein structure initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gza_consurf.spt"</scriptWhenChecked>
-
[[Category: Psi-2]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Putative alpha-l-fucosidase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Structural genomic]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gza ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of putative alpha-L-fucosidase (NP_812709.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.60 A resolution

PDB ID 3gza

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools