This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ks5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:43, 1 February 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ks5| PDB=3ks5 | SCENE= }}
 
-
===Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.05 A resolution===
 
-
==About this Structure==
+
==Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.05 A resolution==
-
[[3ks5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KS5 OCA].
+
<StructureSection load='3ks5' size='340' side='right'caption='[[3ks5]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
[[Category: Agrobacterium tumefaciens str. c58]]
+
== Structural highlights ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<table><tr><td colspan='2'>[[3ks5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KS5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KS5 FirstGlance]. <br>
-
[[Category: Hydrolase]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Jcsg]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ks5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ks5 OCA], [https://pdbe.org/3ks5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ks5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ks5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ks5 ProSAT]</span></td></tr>
-
[[Category: Joint center for structural genomic]]
+
</table>
-
[[Category: Protein structure initiative]]
+
== Function ==
-
[[Category: Psi-2]]
+
[https://www.uniprot.org/uniprot/A9CLR1_AGRFC A9CLR1_AGRFC]
-
[[Category: Putative glycerophosphoryl diester phosphodiesterase]]
+
== Evolutionary Conservation ==
-
[[Category: Structural genomic]]
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/3ks5_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ks5 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Agrobacterium fabrum str. C58]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.05 A resolution

PDB ID 3ks5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools