This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kst

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:43, 1 February 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3kst| PDB=3kst | SCENE= }}
 
-
===Crystal structure of Endo-1,4-beta-xylanase (NP_811807.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.70 A resolution===
 
-
==About this Structure==
+
==Crystal structure of Endo-1,4-beta-xylanase (NP_811807.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.70 A resolution==
-
[[3kst]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KST OCA].
+
<StructureSection load='3kst' size='340' side='right'caption='[[3kst]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
+
== Structural highlights ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<table><tr><td colspan='2'>[[3kst]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KST OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KST FirstGlance]. <br>
-
[[Category: 4-beta-xylanase]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Endo-1]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kst FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kst OCA], [https://pdbe.org/3kst PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kst RCSB], [https://www.ebi.ac.uk/pdbsum/3kst PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kst ProSAT]</span></td></tr>
-
[[Category: Hydrolase]]
+
</table>
-
[[Category: Jcsg]]
+
== Function ==
-
[[Category: Joint center for structural genomic]]
+
[https://www.uniprot.org/uniprot/Q8A3Q9_BACTN Q8A3Q9_BACTN]
-
[[Category: Protein structure initiative]]
+
== Evolutionary Conservation ==
-
[[Category: Psi-2]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Structural genomic]]
+
Check<jmol>
-
[[Category: Xylan degradation]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/3kst_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kst ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of Endo-1,4-beta-xylanase (NP_811807.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.70 A resolution

PDB ID 3kst

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools