This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3lov

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:44, 1 February 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3lov.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Putative protoporphyrinogen oxidase (YP_001813199.1) from Exiguobacterium sp. 255-15 at 2.06 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3lov", creates the "Structure Box" on the page.
+
<StructureSection load='3lov' size='340' side='right'caption='[[3lov]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3lov]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Exiguobacterium_sibiricum_255-15 Exiguobacterium sibiricum 255-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LOV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lov OCA], [https://pdbe.org/3lov PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lov RCSB], [https://www.ebi.ac.uk/pdbsum/3lov PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lov ProSAT]</span></td></tr>
-
{{STRUCTURE_3lov| PDB=3lov | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of Putative protoporphyrinogen oxidase (YP_001813199.1) from Exiguobacterium sp. 255-15 at 2.06 A resolution===
+
[https://www.uniprot.org/uniprot/B1YKJ9_EXIS2 B1YKJ9_EXIS2]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3LOV is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Exiguobacterium_sibiricum Exiguobacterium sibiricum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOV OCA].
+
<jmolCheckbox>
-
[[Category: Exiguobacterium sibiricum]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lo/3lov_consurf.spt"</scriptWhenChecked>
-
[[Category: Protoporphyrinogen oxidase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Flavin containing amine oxidoreductase]]
+
</jmolCheckbox>
-
[[Category: Jcsg]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lov ConSurf].
-
[[Category: Joint center for structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: Oxidoreductase]]
+
__TOC__
-
[[Category: Protein structure initiative]]
+
</StructureSection>
-
[[Category: Psi-2]]
+
[[Category: Exiguobacterium sibiricum 255-15]]
-
[[Category: Putative protoporphyrinogen oxidase]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 25 14:18:23 2010''
+

Current revision

Crystal structure of Putative protoporphyrinogen oxidase (YP_001813199.1) from Exiguobacterium sp. 255-15 at 2.06 A resolution

PDB ID 3lov

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools