This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3myv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:46, 1 February 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3myv| PDB=3myv | SCENE= }}
 
-
===Crystal structure of a SusD superfamily protein (BVU_0732) from Bacteroides vulgatus ATCC 8482 at 1.80 A resolution===
 
-
==About this Structure==
+
==Crystal structure of a SusD superfamily protein (BVU_0732) from Bacteroides vulgatus ATCC 8482 at 1.80 A resolution==
-
[[3myv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_vulgatus Bacteroides vulgatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MYV OCA].
+
<StructureSection load='3myv' size='340' side='right'caption='[[3myv]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Bacteroides vulgatus]]
+
== Structural highlights ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<table><tr><td colspan='2'>[[3myv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phocaeicola_vulgatus_ATCC_8482 Phocaeicola vulgatus ATCC 8482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MYV FirstGlance]. <br>
-
[[Category: Jcsg]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: Joint center for structural genomic]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3myv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3myv OCA], [https://pdbe.org/3myv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3myv RCSB], [https://www.ebi.ac.uk/pdbsum/3myv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3myv ProSAT]</span></td></tr>
-
[[Category: Polysaccharide binding protein]]
+
</table>
-
[[Category: Protein structure initiative]]
+
== Function ==
-
[[Category: Psi-2]]
+
[https://www.uniprot.org/uniprot/A6KYC4_PHOV8 A6KYC4_PHOV8]
-
[[Category: Ragb]]
+
== Evolutionary Conservation ==
-
[[Category: Saccharide binding protein]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Structural genomic]]
+
Check<jmol>
-
[[Category: Susd and hypothetical protein]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/my/3myv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3myv ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Phocaeicola vulgatus ATCC 8482]]

Current revision

Crystal structure of a SusD superfamily protein (BVU_0732) from Bacteroides vulgatus ATCC 8482 at 1.80 A resolution

PDB ID 3myv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools