This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3o0l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:47, 1 February 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3o0l.png|left|200px]]
 
-
{{STRUCTURE_3o0l| PDB=3o0l | SCENE= }}
+
==Crystal structure of a Pfam DUF1425 family member (Shew_1734) from Shewanella sp. pv-4 at 1.81 a resolution==
-
 
+
<StructureSection load='3o0l' size='340' side='right'caption='[[3o0l]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
-
===Crystal structure of a Pfam DUF1425 family member (Shew_1734) from Shewanella sp. pv-4 at 1.81 a resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3o0l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_loihica_PV-4 Shewanella loihica PV-4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O0L FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o0l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o0l OCA], [https://pdbe.org/3o0l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o0l RCSB], [https://www.ebi.ac.uk/pdbsum/3o0l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o0l ProSAT]</span></td></tr>
-
[[3o0l]] is a 2 chain structure of [[Heat Shock Proteins]] with sequence from [http://en.wikipedia.org/wiki/Shewanella_loihica Shewanella loihica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O0L OCA].
+
</table>
-
 
+
== Function ==
-
==See Also==
+
[https://www.uniprot.org/uniprot/A3QDQ3_SHELP A3QDQ3_SHELP]
-
*[[Heat Shock Proteins|Heat Shock Proteins]]
+
== Evolutionary Conservation ==
-
[[Category: Shewanella loihica]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
Check<jmol>
-
[[Category: Jcsg]]
+
<jmolCheckbox>
-
[[Category: Joint center for structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o0/3o0l_consurf.spt"</scriptWhenChecked>
-
[[Category: Pfam duf1425 family member]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Psi-biology]]
+
</jmolCheckbox>
-
[[Category: Structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3o0l ConSurf].
-
[[Category: Unknown function]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Shewanella loihica PV-4]]

Current revision

Crystal structure of a Pfam DUF1425 family member (Shew_1734) from Shewanella sp. pv-4 at 1.81 a resolution

PDB ID 3o0l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools