This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4pc6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4pc6' size='340' side='right'caption='[[4pc6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='4pc6' size='340' side='right'caption='[[4pc6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4pc6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecod1 Ecod1] and [http://en.wikipedia.org/wiki/Ecodh Ecodh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PC6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4pc6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_DH1 Escherichia coli DH1] and [https://en.wikipedia.org/wiki/Escherichia_coli_str._K-12_substr._DH10B Escherichia coli str. K-12 substr. DH10B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PC6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4pc1|4pc1]], [[4pc2|4pc2]], [[4pc3|4pc3]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pc6 OCA], [https://pdbe.org/4pc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pc6 RCSB], [https://www.ebi.ac.uk/pdbsum/4pc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pc6 ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tufA, tuf, ECDH10B_3514 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316385 ECODH]), tsf, EcDH1_3433, ECDH1ME8569_0163 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536056 ECOD1])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pc6 OCA], [http://pdbe.org/4pc6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pc6 RCSB], [http://www.ebi.ac.uk/pdbsum/4pc6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pc6 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/B1X6I9_ECODH B1X6I9_ECODH]] This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.[HAMAP-Rule:MF_00118] [[http://www.uniprot.org/uniprot/C9QRL8_ECOD1 C9QRL8_ECOD1]] Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.[HAMAP-Rule:MF_00050][RuleBase:RU000642]
+
[https://www.uniprot.org/uniprot/A0A0M3KKV1_ECODH A0A0M3KKV1_ECODH] This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.[HAMAP-Rule:MF_00118]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 20:
==See Also==
==See Also==
-
*[[Elongation factor|Elongation factor]]
+
*[[Elongation factor 3D structures|Elongation factor 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecod1]]
+
[[Category: Escherichia coli DH1]]
-
[[Category: Ecodh]]
+
[[Category: Escherichia coli str. K-12 substr. DH10B]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thirup, S S]]
+
[[Category: Thirup SS]]
-
[[Category: Elongation factor]]
+
-
[[Category: G:gef:nucleotide complex]]
+
-
[[Category: Protein synthesis]]
+
-
[[Category: Translation]]
+

Revision as of 12:51, 1 February 2023

Elongation factor Tu:Ts complex with bound GDPNP

PDB ID 4pc6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools