This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4pd8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4pd8' size='340' side='right'caption='[[4pd8]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
<StructureSection load='4pd8' size='340' side='right'caption='[[4pd8]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4pd8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibch Vibch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PD8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PD8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4pd8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PD8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PD8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DMU:DECYL-BETA-D-MALTOPYRANOSIDE'>DMU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P0C:6-METHYL-3-(BETA-D-RIBOFURANOSYL)-3,7-DIHYDRO-2H-PYRROLO[2,3-D]PYRIMIDIN-2-ONE'>P0C</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMU:DECYL-BETA-D-MALTOPYRANOSIDE'>DMU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P0C:6-METHYL-3-(BETA-D-RIBOFURANOSYL)-3,7-DIHYDRO-2H-PYRROLO[2,3-D]PYRIMIDIN-2-ONE'>P0C</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3tij|3tij]], [[4pb1|4pb1]], [[4pd5|4pd5]], [[4pd7|4pd7]], [[4pb2|4pb2]], [[4pd9|4pd9]], [[4pda|4pda]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pd8 OCA], [https://pdbe.org/4pd8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pd8 RCSB], [https://www.ebi.ac.uk/pdbsum/4pd8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pd8 ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VC_2352 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 VIBCH])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pd8 OCA], [http://pdbe.org/4pd8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pd8 RCSB], [http://www.ebi.ac.uk/pdbsum/4pd8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pd8 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9KPL5_VIBCH Q9KPL5_VIBCH]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Vibch]]
+
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
-
[[Category: Johnson, Z L]]
+
[[Category: Johnson ZL]]
-
[[Category: Lee, S Y]]
+
[[Category: Lee S-Y]]
-
[[Category: Drug transporter]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Pyrrolo-cytidine]]
+
-
[[Category: Sodium-coupled transporter]]
+
-
[[Category: Transport protein]]
+

Revision as of 12:53, 1 February 2023

Structure of vcCNT-7C8C bound to pyrrolo-cytidine

PDB ID 4pd8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4pd8"
Personal tools