This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4pva

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:32, 8 February 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of GH62 hydrolase from thermophilic fungus Scytalidium thermophilum==
==Crystal structure of GH62 hydrolase from thermophilic fungus Scytalidium thermophilum==
-
<StructureSection load='4pva' size='340' side='right' caption='[[4pva]], [[Resolution|resolution]] 1.23&Aring;' scene=''>
+
<StructureSection load='4pva' size='340' side='right'caption='[[4pva]], [[Resolution|resolution]] 1.23&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4pva]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PVA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PVA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4pva]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycothermus_thermophilus Mycothermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PVA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PVA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pva OCA], [https://pdbe.org/4pva PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pva RCSB], [https://www.ebi.ac.uk/pdbsum/4pva PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pva ProSAT]</span></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4pvi|4pvi]]</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pva OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pva RCSB], [http://www.ebi.ac.uk/pdbsum/4pva PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A059U759_9PEZI A0A059U759_9PEZI] Alpha-L-arabinofuranosidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose. Releases L-arabinose from arabinoxylan.[ARBA:ARBA00025637][RuleBase:RU368117]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 17:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4pva" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cui, H]]
+
[[Category: Large Structures]]
-
[[Category: Kaur, A P]]
+
[[Category: Mycothermus thermophilus]]
-
[[Category: Nocek, B]]
+
[[Category: Cui H]]
-
[[Category: Savchenko, A]]
+
[[Category: Kaur AP]]
-
[[Category: Xu, X]]
+
[[Category: Nocek B]]
-
[[Category: Arabinofuranohydrolase]]
+
[[Category: Savchenko A]]
-
[[Category: Arabinofuranosidase]]
+
[[Category: Xu X]]
-
[[Category: Arabinoxylan]]
+
-
[[Category: Fungal genomic]]
+
-
[[Category: Gh62 hydrolase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Lignocellulose degradation]]
+

Current revision

Crystal structure of GH62 hydrolase from thermophilic fungus Scytalidium thermophilum

PDB ID 4pva

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools