This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

4qq1

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

Crystal structure of the isotype 1 Transferrin binding protein B (TbpB) from serogroup B Neisseria meningitidis

Structural highlights

4qq1 is a 3 chain structure with sequence from Neisseria meningitidis serogroup B. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	, ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TBPB2_NEIMI Neisseria acquires iron by extracting it from serum transferrin (TF) in its human host. Acts as a TF receptor and is required for TF utilization. Involved in the initial capture of TF. Helps select only those TF molecules that can be used as an iron source and concentrates them on the cell surface, maintaining the iron-loaded status of the TF C-terminal lobe until its delivery to TbpA.[UniProtKB:Q09057]^[1] ^[2]

Publication Abstract from PubMed

Neisseria meningitidis inhabits the human upper respiratory tract and is an important cause of sepsis and meningitis. A surface receptor comprised of transferrin-binding proteins A and B (TbpA and TbpB), is responsible for acquiring iron from host transferrin. Sequence and immunological diversity divides TbpBs into two distinct lineages; isotype I and isotype II. Two representative isotype I and II strains, B16B6 and M982, differ in their dependence on TbpB for in vitro growth on exogenous transferrin. The crystal structure of TbpB and a structural model for TbpA from the representative isotype I N. meningitidis strain B16B6 were obtained. The structures were integrated with a comprehensive analysis of the sequence diversity of these proteins to probe for potential functional differences. A distinct isotype I TbpA was identified that co-varied with TbpB and lacked sequence in the region for the loop 3 alpha-helix that is proposed to be involved in iron removal from transferrin. The tightly associated isotype I TbpBs had a distinct anchor peptide region, a distinct, smaller linker region between the lobes and lacked the large loops in the isotype II C-lobe. Sequences of the intact TbpB, the TbpB N-lobe, the TbpB C-lobe, and TbpA were subjected to phylogenetic analyses. The phylogenetic clustering of TbpA and the TbpB C-lobe were similar with two main branches comprising the isotype 1 and isotype 2 TbpBs, possibly suggesting an association between TbpA and the TbpB C-lobe. The intact TbpB and TbpB N-lobe had 4 main branches, one consisting of the isotype 1 TbpBs. One isotype 2 TbpB cluster appeared to consist of isotype 1 N-lobe sequences and isotype 2 C-lobe sequences, indicating the swapping of N-lobes and C-lobes. Our findings should inform future studies on the interaction between TbpB and TbpA and the process of iron acquisition.

Patterns of structural and sequence variation within isotype lineages of the Neisseria meningitidis transferrin receptor system.,Adamiak P, Calmettes C, Moraes TF, Schryvers AB Microbiologyopen. 2015 Mar 19. doi: 10.1002/mbo3.254. PMID:25800619^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Adamiak P, Calmettes C, Moraes TF, Schryvers AB. Patterns of structural and sequence variation within isotype lineages of the Neisseria meningitidis transferrin receptor system. Microbiologyopen. 2015 Mar 19. doi: 10.1002/mbo3.254. PMID:25800619 doi:http://dx.doi.org/10.1002/mbo3.254
↑ Legrain M, Mazarin V, Irwin SW, Bouchon B, Quentin-Millet MJ, Jacobs E, Schryvers AB. Cloning and characterization of Neisseria meningitidis genes encoding the transferrin-binding proteins Tbp1 and Tbp2. Gene. 1993 Aug 16;130(1):73-80. PMID:8344530 doi:10.1016/0378-1119(93)90348-7
↑ Adamiak P, Calmettes C, Moraes TF, Schryvers AB. Patterns of structural and sequence variation within isotype lineages of the Neisseria meningitidis transferrin receptor system. Microbiologyopen. 2015 Mar 19. doi: 10.1002/mbo3.254. PMID:25800619 doi:http://dx.doi.org/10.1002/mbo3.254

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4qq1"

Categories: Large Structures | Neisseria meningitidis serogroup B | Calmettes C | Moraes TF

@@ Line 1: / Line 1: @@
 ==Crystal structure of the isotype 1 Transferrin binding protein B (TbpB) from serogroup B Neisseria meningitidis==
-<StructureSection load='4qq1' size='340' side='right' caption='[[4qq1]], [[Resolution|resolution]] 3.33&Aring;' scene=''>
+<StructureSection load='4qq1' size='340' side='right'caption='[[4qq1]], [[Resolution|resolution]] 3.33&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4qq1]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QQ1 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4qq1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_serogroup_B Neisseria meningitidis serogroup B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QQ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QQ1 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qq1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qq1 RCSB], [http://www.ebi.ac.uk/pdbsum/4qq1 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qq1 OCA], [https://pdbe.org/4qq1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qq1 RCSB], [https://www.ebi.ac.uk/pdbsum/4qq1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qq1 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/TBB2_NEIMI TBB2_NEIMI]] Acts as a transferrin receptor and is required for transferrin utilization.
+[https://www.uniprot.org/uniprot/TBPB2_NEIMI TBPB2_NEIMI] Neisseria acquires iron by extracting it from serum transferrin (TF) in its human host. Acts as a TF receptor and is required for TF utilization. Involved in the initial capture of TF. Helps select only those TF molecules that can be used as an iron source and concentrates them on the cell surface, maintaining the iron-loaded status of the TF C-terminal lobe until its delivery to TbpA.[UniProtKB:Q09057]<ref>PMID:25800619</ref> <ref>PMID:8344530</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 16: / Line 17: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 4qq1" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Transferrin-binding protein|Transferrin-binding protein]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Calmettes, C]]
+[[Category: Large Structures]]
-[[Category: Moraes, T F]]
+[[Category: Neisseria meningitidis serogroup B]]
-[[Category: Host-pathogen interaction]]
+[[Category: Calmettes C]]
-[[Category: Iron acquisition]]
+[[Category: Moraes TF]]
-[[Category: Iron piracy]]
-[[Category: Outer-membrane]]
-[[Category: Protein binding]]
-[[Category: Surface lipoprotein]]
-[[Category: Transferrin binding]]
-[[Category: Transferrin receptor]]
-[[Category: Vaccine candidate]]

4qq1

From Proteopedia

Current revision

Crystal structure of the isotype 1 Transferrin binding protein B (TbpB) from serogroup B Neisseria meningitidis

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox