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Exonuclease 3D structures

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(New page: == 3D Structures of exonuclease == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *ExN-I **3qea, 3qeb, [[...)
Current revision (10:26, 26 February 2023) (edit) (undo)
 
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**[[3qea]], [[3qeb]], [[5v04]], [[5v05]], [[5v06]], [[5v0b]], [[5v0c]], [[5v0d]], [[5v0e]], [[5uzv]] - hExN-I + DNA - human<br />
**[[3qea]], [[3qeb]], [[5v04]], [[5v05]], [[5v06]], [[5v0b]], [[5v0c]], [[5v0d]], [[5v0e]], [[5uzv]] - hExN-I + DNA - human<br />
-
**[[3qe9]], [[5v07]], [[5v08]], [[5v09]], [[5v0a]] – hExN-I (mutant) + DNA – human<br />
+
**[[3qe9]], [[5v07]], [[5v08]], [[5v09]], [[5v0a]] – hExN-I (mutant) + DNA<br />
 +
**[[5fiq]], [[5fis]] – ExN-I ExN domain – silkworm<br />
**[[1fxx]], [[3c95]] – EcExN-I – ''Escherichia coli''<br />
**[[1fxx]], [[3c95]] – EcExN-I – ''Escherichia coli''<br />
**[[2qxf]] - EcExN-I + TMP<br />
**[[2qxf]] - EcExN-I + TMP<br />
Line 14: Line 15:
**[[4jrp]], [[4jrq]], [[4js5]], [[4js4]], [[4hcc]], [[4hcb]] – EcExN-I + DNA<br />
**[[4jrp]], [[4jrq]], [[4js5]], [[4js4]], [[4hcc]], [[4hcb]] – EcExN-I + DNA<br />
**[[4rg8]] – ExN-I (mutant) – ''Methylocaldum szegedienes''<br />
**[[4rg8]] – ExN-I (mutant) – ''Methylocaldum szegedienes''<br />
-
**[[5fiq]], [[5fis]] – ExN-I ExN domain – silkworm<br />
 
*ExN-III
*ExN-III
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**[[2jc4]] – ExN-IV – ''Nisseria meningitides''
**[[2jc4]] – ExN-IV – ''Nisseria meningitides''
-
*ExN-V
+
*ExN-V or RecBCD
-
**[[1w36]], [[3k70]] – EcExN-V α+β+γ + DNA hairpin<br />
+
**[[7lw7]] – hExN-V (mutant) <br />
-
**[[3e1s]] - EcExN-V RECD subunit<br />
+
**[[7lw8]], [[7lw9]], [[7lwa]] – hExN-V (mutant) + DNA – Cryo EM<br />
-
**[[3gp8]] - DrExN-V RECD subunit + DNA – ''Deinococcus radiodurans''<br />
+
**[[3e1s]] - EcExN-V RecD subunit<br />
-
**[[3gpl]] - DrExN-V RECD subunit + DNA + ADPNP
+
**[[1w36]], [[3k70]] – EcExN-V RecB+RecC+RecD subunits + DNA hairpin<br />
 +
**[[5ld2]] – EcExN-V RecB+RecC+RecD subunits + DNA – Cryo EM<br />
 +
**[[5mbv]] – EcExN-V RecB+RecC+RecD subunits + GAMS – Cryo EM<br />
 +
**[[6sjb]], [[6sje]], [[6sjf]], [[6sjg]], [[6t2u]], [[6t2v]] – EcExN-V RecB (mutant)+RecC+RecD subunits + DNA – Cryo EM<br />
 +
**[[3gp8]] - DrExN-V RecD subunit + DNA – ''Deinococcus radiodurans''<br />
 +
**[[3gpl]] - DrExN-V RecD subunit + DNA + ADPNP
*ExN-VII
*ExN-VII
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**[[3slp]], [[4wuz]] - BlExN λ + DNA<br />
**[[3slp]], [[4wuz]] - BlExN λ + DNA<br />
**[[3sm4]] - BlExN λ (mutant) + DNA<br />
**[[3sm4]] - BlExN λ (mutant) + DNA<br />
 +
**[[6lpm]] - Dr5’-ExN III<br />
**[[3k93]] – ExN – Haemophilus somnus
**[[3k93]] – ExN – Haemophilus somnus
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**[[5ght]] – TkExN – ''Thermococcus kodakarensis''<br />
**[[5ght]] – TkExN – ''Thermococcus kodakarensis''<br />
**[[5ghs]], [[5ghr]] – TkExN + polypeptide<br />
**[[5ghs]], [[5ghr]] – TkExN + polypeptide<br />
 +
**[[7e15]] – TkExN + GINS51 + DNA polymerase II small subunit<br />
**[[5f54]] – DrExN + dTMP<br />
**[[5f54]] – DrExN + dTMP<br />
**[[5f55]] – DrExN + DNA<br />
**[[5f55]] – DrExN + DNA<br />
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**[[4yor]], [[4yot]], [[4you]] – PhExN phoexo I – ''Pyrococcus horikoshii''<br />
**[[4yor]], [[4yot]], [[4you]] – PhExN phoexo I – ''Pyrococcus horikoshii''<br />
**[[4yov]], [[4yow]], [[4yox]], [[4yoy]] – PhExN phoexo I (mutant) + DNA<br />
**[[4yov]], [[4yow]], [[4yox]], [[4yoy]] – PhExN phoexo I (mutant) + DNA<br />
 +
**[[7t2s]] – EcExN <br />
 +
 +
*3’-5’ ExN oligoribonuclease (ORN)
 +
 +
**[[3tr8]] – ORN – ''Coxiella burnetii''<br />
 +
**[[5cy4]] – ORN – ''Acinetobacter baumannii''<br />
 +
**[[6a4a]] – CpORN – ''Colwella psychrerythraea''<br />
 +
**[[6a4d]] – CpORN (mutant) + PNP-TMP <br />
 +
**[[6a4e]] – CpORN (mutant) + RNA<br />
 +
**[[6a4f]] – CpORN + UMP <br />
 +
**[[2gbz]] – ORN – ''Xanthomonas campestris''<br />
 +
**[[1yta]], [[2igi]] – EcORN <br />
 +
**[[1j9a]] – ORN – ''Haemophilus influenzae''<br />
 +
**[[6n6a]], [[6n6c]], [[6n6d]], [[6n6e]] [[6n6f]], [[6n6g]], [[6n6h]] – ORN + RNA – ''Vibrio cholerae''<br />
*5’-3’ ExN
*5’-3’ ExN
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*ExN Trex
*ExN Trex
 +
**[[7tqn]], [[7tqo]], [[7tqp]] - hExN Trex1 (mutant)<br />
 +
**[[7tqq]] - hExN Trex1 + DNA<br />
**[[1y97]] – hExN Trex2<br />
**[[1y97]] – hExN Trex2<br />
**[[2o4g]] - mExN Trex1 + nucleotide – mouse<br />
**[[2o4g]] - mExN Trex1 + nucleotide – mouse<br />
-
**[[3mxj]] - mExN Trex1<br />
+
**[[2ioc]], [[3mxj]] - mExN Trex1<br />
 +
**[[6w10]] - mExN Trex1 (mutant)<br />
**[[2o4i]], [[3mxi]], [[3mxm]], [[3u3y]], [[3u6f]] - mExN Trex1 (mutant) + polynucleotide<br />
**[[2o4i]], [[3mxi]], [[3mxm]], [[3u3y]], [[3u6f]] - mExN Trex1 (mutant) + polynucleotide<br />
**[[2oa8]], [[5ywv]], [[5ywu]], [[5ywt]], [[5yws]] - mExN Trex1 + DNA<br />
**[[2oa8]], [[5ywv]], [[5ywu]], [[5ywt]], [[5yws]] - mExN Trex1 + DNA<br />
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**[[6a4b]], [[6a47]] - mExN Trex2 + DNA<br />
**[[6a4b]], [[6a47]] - mExN Trex2 + DNA<br />
**[[6a46]] - mExN Trex2 + nucleotide<br />
**[[6a46]] - mExN Trex2 + nucleotide<br />
 +
 +
*RNA ExN homolog or oligoribonuclease or REXO2
 +
 +
**[[6rci]] – hExN2<br />
 +
**[[6j7y]] – hExN2 + DNA<br />
 +
**[[6j80]], [[6rcn]] – hExN2 (mutant) + DNA<br />
 +
**[[6n6i]], [[6n6j]], [[6n6k]], [[6rcl]], [[6sty]] – hExN2 + RNA<br />
 +
**[[6j7z]] – hExN2 (mutant) + RNA<br />
*Other ExN
*Other ExN
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**[[1zbu]] - hExn Eri1<br />
**[[1zbu]] - hExn Eri1<br />
**[[1zbh]] - hExn Eri1 (mutant) + DNA<br />
**[[1zbh]] - hExn Eri1 (mutant) + DNA<br />
-
**[[5aho]] – hExN Apollo<br />
+
**[[5aho]], [[7b9b]] – hExN Apollo<br />
 +
**[[7b2x]] – hExN Apollo (mutant)<br />
 +
**[[7a1f]] – hExN Apollo + AMP<br />
**[[5zyw]] – hExN mitochondrial genome repair 1<br />
**[[5zyw]] – hExN mitochondrial genome repair 1<br />
**[[5zyv]], [[5zyu]], [[5zyt]] – hExN mitochondrial genome repair 1 + DNA<br />
**[[5zyv]], [[5zyu]], [[5zyt]] – hExN mitochondrial genome repair 1 + DNA<br />

Current revision

3D Structures of exonuclease

Updated on 26-February-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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