This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4rn7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:20, 8 March 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==The crystal structure of N-acetylmuramoyl-L-alanine amidase from Clostridium difficile 630==
==The crystal structure of N-acetylmuramoyl-L-alanine amidase from Clostridium difficile 630==
-
<StructureSection load='4rn7' size='340' side='right' caption='[[4rn7]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
+
<StructureSection load='4rn7' size='340' side='right'caption='[[4rn7]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4rn7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RN7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RN7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4rn7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RN7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RN7 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rn7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rn7 OCA], [https://pdbe.org/4rn7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rn7 RCSB], [https://www.ebi.ac.uk/pdbsum/4rn7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rn7 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-acetylmuramoyl-L-alanine_amidase N-acetylmuramoyl-L-alanine amidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.28 3.5.1.28] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4rn7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rn7 OCA], [http://pdbe.org/4rn7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4rn7 RCSB], [http://www.ebi.ac.uk/pdbsum/4rn7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4rn7 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q183J9_CLOD6 Q183J9_CLOD6]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: N-acetylmuramoyl-L-alanine amidase]]
+
[[Category: Clostridioides difficile 630]]
-
[[Category: Anderson, W F]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Anderson WF]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Kwon, K]]
+
[[Category: Kwon K]]
-
[[Category: Mulligan, R]]
+
[[Category: Mulligan R]]
-
[[Category: Tan, K]]
+
[[Category: Tan K]]
-
[[Category: Csgid]]
+
-
[[Category: Hydrolase]]
+

Current revision

The crystal structure of N-acetylmuramoyl-L-alanine amidase from Clostridium difficile 630

PDB ID 4rn7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools