This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Galactosidase 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:34, 11 March 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 18: Line 18:
**[[1szn]] – HjAgal – ''Hypocrea jecorina''<br />
**[[1szn]] – HjAgal – ''Hypocrea jecorina''<br />
**[[2xn0]], [[2xn1]] – LaAgal – ''Lactobacillus acidophilus''<br />
**[[2xn0]], [[2xn1]] – LaAgal – ''Lactobacillus acidophilus''<br />
-
**[[4fnp]], [[4ojy]] – GsAgal (mutant) – ''Geobacillus stearothermophilus''<br />
+
**[[4fnp]] – GsAgal (mutant) – ''Geobacillus stearothermophilus''<br />
**[[4fnq]], [[4fnr]], [[4oif]] – GsAgal<br />
**[[4fnq]], [[4fnr]], [[4oif]] – GsAgal<br />
**[[4xpo]] - PsBgal – ''Pedobacter saltans'' <br />
**[[4xpo]] - PsBgal – ''Pedobacter saltans'' <br />
Line 39: Line 39:
**[[4nxs]] - hAgal + jirimycin derivative<br />
**[[4nxs]] - hAgal + jirimycin derivative<br />
**[[6ibk]], [[6ibm]], [[6ibr]], [[6ibt]] - hAgal A + trisaccharide + cyclosulfamidate<br />
**[[6ibk]], [[6ibm]], [[6ibr]], [[6ibt]] - hAgal A + trisaccharide + cyclosulfamidate<br />
 +
**[[7exq]], [[7exr]] - Agal + saccharide – ''Arabidopsis thaliana''<br />
**[[1t0o]] – HjAgal + galactose<br />
**[[1t0o]] – HjAgal + galactose<br />
**[[2xn2]] - LaAgal + galactose<br />
**[[2xn2]] - LaAgal + galactose<br />
Line 58: Line 59:
**[[5iaz]] - rBgal C-terminal - NMR<br />
**[[5iaz]] - rBgal C-terminal - NMR<br />
**[[3og2]] – TrBgal – ''Trichoderma reesei''<br />
**[[3og2]] – TrBgal – ''Trichoderma reesei''<br />
-
**[[1hn1]], [[1dp0]], [[1f4a]], [[1f4h]], [[4v41]], [[4v40]], [[4ttg]], [[6drv]] - EcBgal - Escherichia coli<br />
+
**[[1hn1]], [[1dp0]], [[1f4a]], [[1f4h]], [[4v41]], [[4v40]], [[4ttg]], [[6drv]] - EcBgal - ''Escherichia coli''<br />
 +
**[[3muy]], [[3i3e]], [[3iap]], [[3iaq]], [[3dym]], [[3dyp]], [[1px3]], [[3sep]], [[3t0a]], [[3t2o]], [[3vd3]], [[3vd5]], [[3vda]], [[4duv]] – EcBgal (mutant)<br />
**[[3j7h]], [[6cvm]], [[6drv]], [[6x1q]] – EcBgal – cryo EM<br />
**[[3j7h]], [[6cvm]], [[6drv]], [[6x1q]] – EcBgal – cryo EM<br />
-
**[[3dec]], [[3d3a]], [[3bga]], [[5mt2]], [[5mui]], [[5muj]] – BtBgal<br />
+
**[[3dec]], [[3d3a]], [[3bga]], [[5mt2]], [[5mui]], [[5muj]], [[6euf]], [[6euj]] – BtBgal<br />
**[[6etz]], [[6h1p]], [[6zjv]] - ArBgal – ''Arthrobacter''<br />
**[[6etz]], [[6h1p]], [[6zjv]] - ArBgal – ''Arthrobacter''<br />
**[[1yq2]], [[6se8]], [[6zjp]] - ArBgal (mutant)<br />
**[[1yq2]], [[6se8]], [[6zjp]] - ArBgal (mutant)<br />
Line 71: Line 73:
**[[4ha3]], [[4ha4]] – Bgal – ''Acidilobus saccharovorans''<br />
**[[4ha3]], [[4ha4]] – Bgal – ''Acidilobus saccharovorans''<br />
**[[3wq8]], [[6jow]] – Bgal – ''Pyrococcus furiosus''<br />
**[[3wq8]], [[6jow]] – Bgal – ''Pyrococcus furiosus''<br />
-
**[[4cu6]] – SpBgal catalytic module residues 137-985– ''Streptococcus pneumoniae''<br />
+
**[[4cu6]], [[4cu8]] – SpBgal catalytic module residues 137-985– ''Streptococcus pneumoniae''<br />
**[[4cu9]] – SpBgal carbohydrate-binding module II residues 1822-1998 <br />
**[[4cu9]] – SpBgal carbohydrate-binding module II residues 1822-1998 <br />
**[[4cua]] – SpBgal carbohydrate-binding module I residues 1463-1645 <br />
**[[4cua]] – SpBgal carbohydrate-binding module I residues 1463-1645 <br />
Line 78: Line 80:
**[[5vym]] - Bgal – ''Bifidobacterium adolescentis''<br />
**[[5vym]] - Bgal – ''Bifidobacterium adolescentis''<br />
**[[5nav]], [[5naq]] - Bgal – ''Lactobacillus plantarum''<br />
**[[5nav]], [[5naq]] - Bgal – ''Lactobacillus plantarum''<br />
 +
**[[5yhs]] - BacBgal – ''Bacillus'' <br />
**[[3ob8]], [[3oba]] – Bgal – ''Kluyveromyces lactis''<br />
**[[3ob8]], [[3oba]] – Bgal – ''Kluyveromyces lactis''<br />
**[[5dfa]] - GsBgal (mutant) <br />
**[[5dfa]] - GsBgal (mutant) <br />
-
**[[5dmy]], [[6quc]] - BbBgal – ''Bifidobacterium bifidum''<br />
+
**[[5dmy]], [[6quc]], [[7nit]] - BbBgal – ''Bifidobacterium bifidum''<br />
**[[5e9a]] - Bgal - ''Rahnella''<br />
**[[5e9a]] - Bgal - ''Rahnella''<br />
**[[5euv]] - ParBgal - ''Paracoccus''<br />
**[[5euv]] - ParBgal - ''Paracoccus''<br />
-
**[[5ifp]] - Bgal – ''Aspergillus niger''<br />
+
**[[5ifp]] - AnBgal – ''Aspergillus niger''<br />
**[[6mvh]] - Bgal – ''Roseburia hominis''<br />
**[[6mvh]] - Bgal – ''Roseburia hominis''<br />
**[[6hpd]] - Bgal – ''Formosa agariphila''<br />
**[[6hpd]] - Bgal – ''Formosa agariphila''<br />
Line 90: Line 93:
**[[6u7i]] - FpBgal – ''Faecaibavterium prausnitzii''<br />
**[[6u7i]] - FpBgal – ''Faecaibavterium prausnitzii''<br />
**[[6u7j]] - Bgal – ''Clostridium''<br />
**[[6u7j]] - Bgal – ''Clostridium''<br />
 +
**[[6m4e]] - Bgal – ''Hamamotoa singularis''<br />
**[[6ld6]] - BdBgal – ''Bifidobacterium dentium''<br />
**[[6ld6]] - BdBgal – ''Bifidobacterium dentium''<br />
**[[6ec6]], [[6jz1]] - RgBgal – ''Ruminococcus gnavus''<br />
**[[6ec6]], [[6jz1]] - RgBgal – ''Ruminococcus gnavus''<br />
**[[7kmn]] - XcBgal – ''Xanthomonas citri'' <br />
**[[7kmn]] - XcBgal – ''Xanthomonas citri'' <br />
 +
**[[4d1i]] - CjBgal – ''Cellvibrio japonicus''<br />
 +
**[[7f1n]] - Bgal - ''Thermofilum''<br />
 +
**[[7sf2]] - Bgal – ''Bacterioides cellulosilyticus''<br />
*''β-Galactosidase binary complex with galactose''
*''β-Galactosidase binary complex with galactose''
Line 106: Line 113:
**[[4iug]] - Bgal + galactose – ''Aspergillus oryzae''<br />
**[[4iug]] - Bgal + galactose – ''Aspergillus oryzae''<br />
**[[3tty]] - BcBgal + galactose<br />
**[[3tty]] - BcBgal + galactose<br />
-
**[[4cub]] – SpBgal carbohydrate-binding module I + galactose <br />
+
**[[4cub]], [[4e8c]], [[4e8d]] – SpBgal carbohydrate-binding module I + galactose <br />
**[[4cuc]] – SpBgal catalytic module (mutant) + galactose <br />
**[[4cuc]] – SpBgal catalytic module (mutant) + galactose <br />
**[[4uni]] - BaBgal + galactose <br />
**[[4uni]] - BaBgal + galactose <br />
Line 116: Line 123:
**[[6sed]] - ArBgal + galactose <br />
**[[6sed]] - ArBgal + galactose <br />
**[[6zjq]], [[6zjs]], [[6zjw]] - ArBgal (mutant) + galactose <br />
**[[6zjq]], [[6zjs]], [[6zjw]] - ArBgal (mutant) + galactose <br />
 +
**[[6zju]] - ArBgal (mutant) + saccharose <br />
 +
**[[5yif]] - BacBgal (mutant) + galactose <br />
**[[7kmo]] - XcBgal + galactose <br />
**[[7kmo]] - XcBgal + galactose <br />
 +
**[[6eui]] - BtBgal + galactose<br />
*''β-Galactosidase other complexes''
*''β-Galactosidase other complexes''
Line 151: Line 161:
**[[6se9]], [[6sea]] - ArBgal (mutant) + lactose<br />
**[[6se9]], [[6sea]] - ArBgal (mutant) + lactose<br />
**[[6zjx]] - ArBgal (mutant) + saccharose<br />
**[[6zjx]] - ArBgal (mutant) + saccharose<br />
 +
**[[6zjr]], [[6zjt]] - ArBgal (mutant) + lactulose<br />
**[[7cwd]] - BcBgal + disaccharide<br />
**[[7cwd]] - BcBgal + disaccharide<br />
**[[6ld0]], [[6ldb]], [[6ldc]], [[6ldd]] - BdBgal + Gauche drug<br />
**[[6ld0]], [[6ldb]], [[6ldc]], [[6ldd]] - BdBgal + Gauche drug<br />
**[[6jz2]], [[6jz6]], [[6jz7]] - RgBgal + Gauche drug <br />
**[[6jz2]], [[6jz6]], [[6jz7]] - RgBgal + Gauche drug <br />
**[[6jz4]], [[6jz8]] - RgBgal + glucaro lactone<br />
**[[6jz4]], [[6jz8]] - RgBgal + glucaro lactone<br />
 +
**[[5mgc]], [[5mgd]] - RgBgal (mutant) + disaccharise <br />
**[[6jz3]] - RgBgal + drug <br />
**[[6jz3]] - RgBgal + drug <br />
-
**[[6jz4]] - RgBgal + glucuronic acid <br />
 
**[[6mvf]] - FpBgal + FMN <br />
**[[6mvf]] - FpBgal + FMN <br />
**[[6d4o]] - Bgal + glucuronic acid derivative – ''Lachnospira eligens''<br />
**[[6d4o]] - Bgal + glucuronic acid derivative – ''Lachnospira eligens''<br />
**[[6euh]] - BtBgal + drug <br />
**[[6euh]] - BtBgal + drug <br />
 +
**[[6eug]] - BtBgal + galactoimidazole<br />
 +
**[[7zvo]] - BtBgal + Ser + Ala <br />
 +
**[[5jaw]], [[6tbf]], [[6tbg]], [[6tbh]], [[6tbi]], [[6tbj]], [[6tbk]] - CjBgal + inhibitor<br />
 +
**[[4d1j]] - CjBgal + drug <br />
 +
**[[5ift]], [[5ihr]], [[5juv]] - AnBgal (mutant) + saccharide<br />
*Endo-1,4-β-galactosidase
*Endo-1,4-β-galactosidase
Line 167: Line 183:
**[[2ygl]], [[2ygm]] – SpEbgal blood group A & B cleaving <br />
**[[2ygl]], [[2ygm]] – SpEbgal blood group A & B cleaving <br />
**[[4bf7]] – Ebgal – ''Emericella nidulans''<br />
**[[4bf7]] – Ebgal – ''Emericella nidulans''<br />
 +
**[[7pmo]] – Rggal <br />
 +
**[[7q1w]], [[7q20]] – Rggal (mutant) + polysaccharide<br />
*3,6-anhydro-α-L-galactosidase
*3,6-anhydro-α-L-galactosidase
**[[3p2n]], [[5opq]] – AAgal – ''Zobellia galactanivorans''<br />
**[[3p2n]], [[5opq]] – AAgal – ''Zobellia galactanivorans''<br />
-
**[[4ak5]] – BpAAgal – ''Bacterioides plebeius''<br />
+
**[[4ak5]], [[7ljj]] – BpAAgal – ''Bacterioides plebeius''<br />
**[[4ak6]] – BpAAgal (mutant)<br />
**[[4ak6]] – BpAAgal (mutant)<br />
-
**[[4ak7]] – BpAAgal (mutant) + polysaccharide<br />
+
**[[4ak7]], [[7lnp]] – BpAAgal (mutant) + polysaccharide<br />
 +
**[[7lk7]] – BpAAgal + galactose<br />
*6-phospho-β-D-galactosidase
*6-phospho-β-D-galactosidase
**[[2pbg]], [[3pbg]], [[4pbg]], [[1pbg]] – Pgal (mutant) – ''Lactococcus lacti''<br />
**[[2pbg]], [[3pbg]], [[4pbg]], [[1pbg]] – Pgal (mutant) – ''Lactococcus lacti''<br />
-
**[[2v4v]] – gal GH59 – ''Clostridium cellulolyticum''
+
**[[2v4v]] – gal GH59 – ''Clostridium cellulolyticum''<br />
 +
**[[4zep]] – GsPgal + phospho-glucose<br />
 +
**[[7m1r]] – Pgal – ''Bacillus licheiformis''<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of Galactosidase

Updated on 11-March-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/Galactosidase_3D_structures"
Personal tools