This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Gcn4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:32, 12 March 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
 +
<StructureSection load='2dgc' size='350' side='right' caption='Structure of Gcn4 leucine zipper domain complex with DNA (PDB entry [[2dgc]])' scene=''54/540145/Biological_assembly/1''>
 +
== Function ==
-
{{STRUCTURE_2dgc| PDB=2dgc | SIZE=400| SCENE= |right|CAPTION=Gcn4 complex with DNA [[2dgc]] }}
+
'''Gcn4''' or '''General control protein Gcn4''' is a yeast transcriptional activator. It belongs to a large family of eukaryotic transcription factors including Fos, Jun and CREB. <ref>PMID:7934812</ref> Gcn4-pLI is a 33-residue peptide of the dimerization domain of Gcn4. See also [[Intrinsically Disordered Protein]].
-
'''Gcn4''' is a yeast transcriptional activator. It belongs to a large family of eukaryotic transcription factors including Fos, Jun and CREB. All family members have a DNA recognition motif consists of a coiled-coil dimerization element, the leucine-zipper, and an adjoining basic region, which mediates DNA binding. This basic region is largely unstructured in the absence of DNA, addition of DNA containing a Gcn4 binding site induce the transition of this region from unstructured to α-helical. See also [[Intrinsically Disordered Protein]].
+
== Structural highlights ==
-
== 3D Structures of Gcn4 ==
+
Gcn4 and other family members have a DNA recognition motif consisting of a coiled-coil dimerization element, the leucine-zipper, and an adjoining basic region, which mediates DNA binding. This basic region is largely unstructured in the absence of DNA, addition of DNA containing a Gcn4 binding site induces the transition of this region from unstructured to α-helical.
-
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+
See [[Coiled coil]].
-
[[2zta]], [[1w5i]], [[2b1f]], [[2b22]], [[2ag3]], [[2oxj]], [[2oxk]], [[2r2v]], [[4c46]] – yGcn4 - yeast <br />
+
== 3D Structures of Gcn4 ==
-
[[2ovn]], [[2l56]] – yGcn4 - NMR<br />
+
[[Gcn4 3D Structures]]
-
[[1u2u]] – yGcn4 dimer - NMR<br />
+
-
[[4dmd]], [[1kd8]], [[1kd9]], [[1kdd]], [[4hu5]], [[4hu6]] – yGcn4 dimer <br />
+
-
[[4dme]] – yGcn4 trimer <br />
+
-
[[3ck4]], [[3crp]], [[2ipz]] – yGcn4 tetramer <br />
+
-
[[1gcl]], [[1swi]], [[1ce9]], [[1w5g]], [[1w5h]], [[1w5j]], [[1w5k]], [[1w5l]], [[1unt]], [[1unu]], [[1unv]], [[1unw]], [[1unx]], [[1uny]], [[1unz]], [[1uo0]], [[1uo1]], [[1uo2]], [[1uo3]], [[1uo4]], [[1uo5]], [[1u9f]], [[1u9g]], [[1u9h]], [[2bni]], [[2cce]], [[2ccf]], [[2ccn]], [[2ahp]], [[2hy6]], [[3i1g]], [[2wpy]], [[2wpz]], [[2wq0]], [[2wq1]], [[2wq2]], [[2wq3]], [[3k7z]], [[3gjp]], [[3m48]] – yGcn4 (mutant)<br />
+
-
[[1zii]], [[1zik]], [[1zil]] – yGcn4 dimer (mutant)<br />
+
-
[[2o7h]], [[1gcm]], [[1zij]], [[1zim]], [[1piq]], [[1ij0]], [[1ij1]], [[1ij2]], [[1ij3]], [[1rb4]], [[1rb5]], [[1rb6]] – yGcn4 trimer (mutant)<br />
+
-
[[2nrn]] – yGcn4 tetramer (mutant)<br />
+
-
[[1fmh]] – yGcn4 dimer (mutant) - NMR<br />
+
-
[[1c94]] – yGcn4 retro<br />
+
-
[[1ysa]], [[1dgc]], [[2dgc]] – yGcn4 dimer + DNA <br />
+
-
[[2lpb]] – yGcn4 + mediator of RNA polymerase II<br />
+
-
 
+
-
===Gcn4 fusion proteins===
+
-
 
+
-
[[1gk6]] – yGcn4/vimentin<br />
+
-
[[2wg5]] – yGcn4/proteasome-activating nucleotidase<br />
+
-
[[2wg6]] – yGcn4 (mutant)/proteasome-activating nucleotidase<br />
+
-
[[2yny]], [[2ynz]], [[2yo0]], [[2yo1]], [[2yo2]], [[2yo3]], [[3zmf]] – yGcn4/inner membrane protein<br />
+
-
[[3i5c]] – yGcn4/WSPR response regulator<br />
+
-
[[3p8m]] – yGcn4/dynein<br />
+
-
[[4g2k]], [[1env]], [[1fav]], [[1gcl]], [[2q5u]], [[2q7c]], [[3g9r]] – yGcn4/virus envelope glycoprotein<br />
+
-
[[1kql]], [[2z5i]] – yGcn4/α-tropomyosin<br />
+
-
[[2z5h]] – yGcn4/α-tropomyosin + troponin T<br />
+
-
[[3bas]], [[3bat]] – yGcn4/myosin<br />
+
-
[[1wvl]], [[2d3e]], [[2efr]], [[2efs]], [[2g9j]] – yGcn4/SAC7D + DNA<br />
+
-
[[4m8m]] – yGcn4/plexin<br />
+
-
[[1ld4]] – yGcn4 + virus coat protein + virus spike glycoprotein<br />
+
</StructureSection>
 +
== References ==
 +
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Structure of Gcn4 leucine zipper domain complex with DNA (PDB entry 2dgc)

Drag the structure with the mouse to rotate

References

  1. Hinnebusch AG. Gene-specific translational control of the yeast GCN4 gene by phosphorylation of eukaryotic initiation factor 2. Mol Microbiol. 1993 Oct;10(2):215-23. PMID:7934812

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Karsten Theis, Alexander Berchansky

Personal tools