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2n85
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 2n85 is ON HOLD Authors: Nadezhdin, K., Romanovskaya, D., Sachkova, M., Vassilevski, A., Grishin, E., Kovalchuk, S., Arseniev, A. Description: NMR ...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==NMR structure of OtTx1a - AMP in DPC micelles== | |
| + | <StructureSection load='2n85' size='340' side='right'caption='[[2n85]]' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2n85]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oxyopes_takobius Oxyopes takobius]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N85 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N85 FirstGlance]. <br> | ||
| + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2n85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2n85 OCA], [https://pdbe.org/2n85 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2n85 RCSB], [https://www.ebi.ac.uk/pdbsum/2n85 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2n85 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/SPN1A_OXYTA SPN1A_OXYTA] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We have recently demonstrated that a common phenomenon in evolution of spider venom composition is the emergence of so-called modular toxins consisting of two domains, each corresponding to a "usual" single-domain toxin. In this article, we describe the structure of two domains that build up a modular toxin named spiderine or OtTx1a from the venom of Oxyopes takobius. Both domains were investigated by solution NMR in water and detergent micelles used to mimic membrane environment. The N-terminal spiderine domain OtTx1a-AMP (41 amino acid residues) contains no cysteines. It is disordered in aqueous solution but in micelles, it assumes a stable amphiphilic structure consisting of two alpha-helices separated by a flexible linker. On the contrary, the C-terminal domain OtTx1a-ICK (59 residues) is a disulfide-rich polypeptide reticulated by five S-S bridges. It presents a stable structure in water and its core is the inhibitor cystine knot (ICK) or knottin motif that is common among single-domain neurotoxins. OtTx1a-ICK structure is the first knottin with five disulfide bridges and it represents a good reference for the whole oxytoxin family. The affinity of both domains to membranes was measured with NMR using titration by liposome suspensions. In agreement with biological tests, OtTx1a-AMP was found to show high membrane affinity explaining its potent antimicrobial properties. | ||
| - | + | Modular toxin from the lynx spider Oxyopes takobius: Structure of spiderine domains in solution and membrane-mimicking environment.,Nadezhdin KD, Romanovskaia DD, Sachkova MY, Oparin PB, Kovalchuk SI, Grishin EV, Arseniev AS, Vassilevski AA Protein Sci. 2017 Mar;26(3):611-616. doi: 10.1002/pro.3101. Epub 2017 Feb 12. PMID:27997708<ref>PMID:27997708</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 2n85" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: Romanovskaya | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Oxyopes takobius]] |
| + | [[Category: Arseniev A]] | ||
| + | [[Category: Grishin E]] | ||
| + | [[Category: Kovalchuk S]] | ||
| + | [[Category: Nadezhdin K]] | ||
| + | [[Category: Romanovskaya D]] | ||
| + | [[Category: Sachkova M]] | ||
| + | [[Category: Vassilevski A]] | ||
Current revision
NMR structure of OtTx1a - AMP in DPC micelles
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