JMS/sandbox/yeast
From Proteopedia
(Difference between revisions)
| (17 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | ==Your Heading Here (maybe something like 'Structure')== | + | <scene name='89/890834/Msn2_nucleosome_0/1'>Text To Be Displayed</scene>==Your Heading Here (maybe something like 'Structure')== |
| - | <StructureSection load=' | + | <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> |
This is a default text for your page '''JMS/sandbox/yeast'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | This is a default text for your page '''JMS/sandbox/yeast'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
| Line 11: | Line 11: | ||
== Structural highlights == | == Structural highlights == | ||
| + | <scene name='89/890834/Msn2_0/5'>msn2 zinc fingers and termini</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_0/6'>zoomed in, and spinning</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn4_0/1'>initial msn4</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2msn4/1'>initial view of msn2 msn4 alignment file Y21m08d20_msn2msn4_1.pdb</scene> | ||
| + | |||
| + | <scene name='89/890834/N2f/1'>alpha fold prediction for n2f in idr swaps</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_nucleosome_0/1'>msn2 alphafold on a nuclesome</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_nucleosome_0/4'>showing dbd in yellow halos</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_nucleosome_0/5'>showing dbd in yellow halos only on the nucleosome</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_nucleosome_0/6'>showing major regions of the protein</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_nucleosome_0/7'>showing d370</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_nucleosome_0/8'>showing major regions of the protein and dna</scene> | ||
| + | |||
| + | <scene name='89/890834/Msn2_nucleosome_0/10'>red idr and blue nls+dbd</scene> | ||
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
Current revision
==Your Heading Here (maybe something like 'Structure')==
| |||||||||||
References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
