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5apg

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Current revision (06:21, 31 May 2023) (edit) (undo)
 
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<StructureSection load='5apg' size='340' side='right'caption='[[5apg]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='5apg' size='340' side='right'caption='[[5apg]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5apg]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Vuldi Vuldi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5APG FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5apg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vulcanisaeta_distributa_DSM_14429 Vulcanisaeta distributa DSM 14429]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5APG FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EEM:[(3S)-3-AMINO-4-HYDROXY-4-OXO-BUTYL]-[[(2S,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL]-METHYL-SELANIUM'>EEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EEM:[(3S)-3-AMINO-4-HYDROXY-4-OXO-BUTYL]-[[(2S,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL]-METHYL-SELANIUM'>EEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5apg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5apg OCA], [https://pdbe.org/5apg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5apg RCSB], [https://www.ebi.ac.uk/pdbsum/5apg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5apg ProSAT]</span></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ap8|5ap8]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5apg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5apg OCA], [http://pdbe.org/5apg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5apg RCSB], [http://www.ebi.ac.uk/pdbsum/5apg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5apg ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/E1QU22_VULDI E1QU22_VULDI]] Probable pre-rRNA processing protein involved in ribosome biogenesis.[HAMAP-Rule:MF_01116]
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[https://www.uniprot.org/uniprot/TSR3_VULDI TSR3_VULDI] Aminocarboxypropyltransferase that catalyzes the aminocarboxypropyl transfer on pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. It constitutes the last step in biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi).[HAMAP-Rule:MF_01116]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Vuldi]]
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[[Category: Vulcanisaeta distributa DSM 14429]]
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[[Category: Entian, K D]]
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[[Category: Entian K-D]]
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[[Category: Immer, C]]
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[[Category: Immer C]]
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[[Category: Koetter, P]]
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[[Category: Koetter P]]
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[[Category: Meyer, B]]
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[[Category: Meyer B]]
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[[Category: Pogoryelov, D]]
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[[Category: Pogoryelov D]]
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[[Category: Woehnert, J]]
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[[Category: Woehnert J]]
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[[Category: Wurm, J P]]
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[[Category: Wurm JP]]
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[[Category: Pseudouridine]]
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[[Category: Rrna]]
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[[Category: S-adenosylmethionine]]
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[[Category: S-adenosylmethionine dependent 3-amino-3-carboxypropyl transferase]]
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[[Category: Sam]]
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[[Category: Spout-fold]]
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[[Category: Transferase]]
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Current revision

Structure of the SAM-dependent rRNA:acp-transferase Tsr3 from Vulcanisaeta distributa

PDB ID 5apg

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