This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5axe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='5axe' size='340' side='right'caption='[[5axe]], [[Resolution|resolution]] 0.95&Aring;' scene=''>
<StructureSection load='5axe' size='340' side='right'caption='[[5axe]], [[Resolution|resolution]] 0.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5axe]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AXE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AXE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5axe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AXE FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LSH:[(1R,5R,7R,8S)-7-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-8-OXIDANYL-3,3-BIS(OXIDANYLIDENE)-6-OXA-3$L^{6}-THIA-2-AZABICYCLO[3.2.1]OCTAN-5-YL]METHYL+DIHYDROGEN+PHOSPHATE'>LSH</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LSH:[(1R,5R,7R,8S)-7-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-8-OXIDANYL-3,3-BIS(OXIDANYLIDENE)-6-OXA-3$L^{6}-THIA-2-AZABICYCLO[3.2.1]OCTAN-5-YL]METHYL+DIHYDROGEN+PHOSPHATE'>LSH</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5axf|5axf]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5axe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5axe OCA], [https://pdbe.org/5axe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5axe RCSB], [https://www.ebi.ac.uk/pdbsum/5axe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5axe ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5axe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5axe OCA], [http://pdbe.org/5axe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5axe RCSB], [http://www.ebi.ac.uk/pdbsum/5axe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5axe ProSAT]</span></td></tr>
+
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 22: Line 21:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Aoyama, H]]
+
[[Category: Synthetic construct]]
-
[[Category: Fujimura, Y]]
+
[[Category: Aoyama H]]
-
[[Category: Hari, Y]]
+
[[Category: Fujimura Y]]
-
[[Category: Kugimiya, A]]
+
[[Category: Hari Y]]
-
[[Category: Mitsuoka, Y]]
+
[[Category: Kugimiya A]]
-
[[Category: Noda, M]]
+
[[Category: Mitsuoka Y]]
-
[[Category: Obika, S]]
+
[[Category: Noda M]]
-
[[Category: Sawamura, M]]
+
[[Category: Obika S]]
-
[[Category: Tahara, S]]
+
[[Category: Sawamura M]]
-
[[Category: Wada, F]]
+
[[Category: Tahara S]]
-
[[Category: Waki, R]]
+
[[Category: Wada F]]
-
[[Category: Yamamoto, T]]
+
[[Category: Waki R]]
-
[[Category: A-form dna]]
+
[[Category: Yamamoto T]]
-
[[Category: Antisense]]
+
-
[[Category: Dna]]
+
-
[[Category: Sulfonamide-bridged nucleic acid]]
+

Revision as of 06:29, 31 May 2023

Crystal Structure Analysis of DNA Duplexes containing sulfoamide-bridged nucleic acid (SuNA-NH)

PDB ID 5axe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools