This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5b5s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:39, 31 May 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5b5s' size='340' side='right'caption='[[5b5s]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='5b5s' size='340' side='right'caption='[[5b5s]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5b5s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acremonium_cellulolyticus Acremonium cellulolyticus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3x0h 3x0h]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B5S FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5b5s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Talaromyces_pinophilus Talaromyces pinophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3x0h 3x0h]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B5S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B5S FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">axe, TCE0_004r00149 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1472165 Acremonium cellulolyticus])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b5s OCA], [https://pdbe.org/5b5s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b5s RCSB], [https://www.ebi.ac.uk/pdbsum/5b5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b5s ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b5s OCA], [http://pdbe.org/5b5s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b5s RCSB], [http://www.ebi.ac.uk/pdbsum/5b5s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b5s ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0A8IBJ8_TALPI A0A0A8IBJ8_TALPI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Acremonium cellulolyticus]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ishikawa, K]]
+
[[Category: Talaromyces pinophilus]]
-
[[Category: Watanabe, M]]
+
[[Category: Ishikawa K]]
-
[[Category: Biomass]]
+
[[Category: Watanabe M]]
-
[[Category: Carbohydrate esterase]]
+
-
[[Category: Catalytic triad]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Saccharification xylanase]]
+

Current revision

Crystal structure of a carbohydrate esterase family 3 from Talaromyces cellulolyticus

PDB ID 5b5s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools