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5bni

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'''Unreleased structure'''
 
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The entry 5bni is ON HOLD until Paper Publication
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==Porcine CD38 complexed with complexed with a covalent intermediate, ribo-F-ribose-5'-phosphate==
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<StructureSection load='5bni' size='340' side='right'caption='[[5bni]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5bni]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BNI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BNI FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AVW:[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+[(2R,3R,4S)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+DIPHOSPHATE'>AVW</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bni FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bni OCA], [https://pdbe.org/5bni PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bni RCSB], [https://www.ebi.ac.uk/pdbsum/5bni PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bni ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/F1S5D9_PIG F1S5D9_PIG]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cyclic ADP-ribose (cADPR) mobilizes intracellular Ca(2+) stores and activates Ca(2+) influx to regulate a wide range of physiological processes. It is one of the products produced from the catalysis of NAD(+) by the multifunctional CD38/ADP-ribosyl cyclase superfamily. After elimination of the nicotinamide ring by the enzyme, the reaction intermediate of NAD(+) can either be hydrolyzed to form linear ADPR or cyclized to form cADPR. We have previously shown that human CD38 exhibits a higher preference towards the hydrolysis of NAD(+) to form linear ADPR while Aplysia ADP-ribosyl cyclase prefers cyclizing NAD(+) to form cADPR. In this study, we characterized the enzymatic properties of porcine CD38 and revealed that it has a prominent secondary NAD(+) cyclase activity producing cADPR. We also determined the X-ray crystallographic structures of porcine CD38 and were able to observe conformational flexibility at the base of the active site of the enzyme which allow the NAD(+) reaction intermediate to adopt conformations resulting in both hydrolysis and cyclization forming linear ADPR and cADPR respectively.
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Authors: Ting, K.Y., Leung, C.F.P., Graeff, R.M., Lee, H.C., Hao, Q., Kotaka, M.
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Porcine CD38 exhibits prominent secondary NAD(+) cyclase activity.,Ting KY, Leung CF, Graeff RM, Lee HC, Hao Q, Kotaka M Protein Sci. 2016 Mar;25(3):650-61. doi: 10.1002/pro.2859. Epub 2016 Jan 12. PMID:26660500<ref>PMID:26660500</ref>
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Description: Porcine CD38 complexed with complexed with a covalent intermediate, ribo-F-ribose-5'-phosphate
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Hao, Q]]
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<div class="pdbe-citations 5bni" style="background-color:#fffaf0;"></div>
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[[Category: Ting, K.Y]]
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== References ==
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[[Category: Kotaka, M]]
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<references/>
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[[Category: Leung, C.F.P]]
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__TOC__
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[[Category: Graeff, R.M]]
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</StructureSection>
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[[Category: Lee, H.C]]
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[[Category: Large Structures]]
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[[Category: Sus scrofa]]
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[[Category: Graeff RM]]
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[[Category: Hao Q]]
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[[Category: Kotaka M]]
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[[Category: Lee HC]]
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[[Category: Leung CFP]]
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[[Category: Ting KY]]

Current revision

Porcine CD38 complexed with complexed with a covalent intermediate, ribo-F-ribose-5'-phosphate

PDB ID 5bni

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