This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5c6j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:21, 7 June 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation==
==Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation==
-
<StructureSection load='5c6j' size='340' side='right' caption='[[5c6j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='5c6j' size='340' side='right'caption='[[5c6j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5c6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5C6J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5c6j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5C6J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5C6J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DO3:10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE+1,4,7-TRIACETIC+ACID'>DO3</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5c6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6j OCA], [https://pdbe.org/5c6j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5c6j RCSB], [https://www.ebi.ac.uk/pdbsum/5c6j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6j ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5c6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5c6j OCA], [http://pdbe.org/5c6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5c6j RCSB], [http://www.ebi.ac.uk/pdbsum/5c6j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5c6j ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
+
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 18:
</div>
</div>
<div class="pdbe-citations 5c6j" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5c6j" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 24: Line 26:
</StructureSection>
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Lysozyme]]
+
[[Category: Large Structures]]
-
[[Category: Barends, T R.M]]
+
[[Category: Barends TRM]]
-
[[Category: Barty, A]]
+
[[Category: Barty A]]
-
[[Category: Botha, S]]
+
[[Category: Botha S]]
-
[[Category: Boutet, S]]
+
[[Category: Boutet S]]
-
[[Category: Caleman, C]]
+
[[Category: Caleman C]]
-
[[Category: Chapman, H N]]
+
[[Category: Chapman HN]]
-
[[Category: Doak, R B]]
+
[[Category: Doak RB]]
-
[[Category: Galli, L]]
+
[[Category: Galli L]]
-
[[Category: Nanao, M H]]
+
[[Category: Nanao MH]]
-
[[Category: Nass, K]]
+
[[Category: Nass K]]
-
[[Category: Santra, R]]
+
[[Category: Santra R]]
-
[[Category: Schlichting, I]]
+
[[Category: Schlichting I]]
-
[[Category: Shoeman, R L]]
+
[[Category: Shoeman RL]]
-
[[Category: Son, S K]]
+
[[Category: Son S-K]]
-
[[Category: Timneanu, N]]
+
[[Category: Timneanu N]]
-
[[Category: White, T A]]
+
[[Category: White TA]]
-
[[Category: Gadoteridol]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Xfel]]
+

Current revision

Crystal Structure of Gadolinium derivative of HEWL solved using Free-Electron Laser radiation

PDB ID 5c6j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5c6j"
Personal tools