This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1umq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 14 June 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==SOLUTION STRUCTURE AND DNA BINDING OF THE EFFECTOR DOMAIN FROM THE GLOBAL REGULATOR PRRA(REGA) FROM R. SPHAEROIDES: INSIGHTS INTO DNA BINDING SPECIFICITY==
+
 
-
<StructureSection load='1umq' size='340' side='right' caption='[[1umq]], [[NMR_Ensembles_of_Models | 5 NMR models]]' scene=''>
+
==solution structure and DNA binding of the effector domain from the global regulator PrrA(RegA) from R. sphaeroides: Insights into DNA binding specificity==
 +
<StructureSection load='1umq' size='340' side='right'caption='[[1umq]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1umq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodococcus_capsulatus"_molisch_1907 "rhodococcus capsulatus" molisch 1907]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UMQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UMQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1umq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UMQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UMQ FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1umq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1umq OCA], [http://pdbe.org/1umq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1umq RCSB], [http://www.ebi.ac.uk/pdbsum/1umq PDBsum]</span></td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1umq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1umq OCA], [https://pdbe.org/1umq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1umq RCSB], [https://www.ebi.ac.uk/pdbsum/1umq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1umq ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/REGA_CERS4 REGA_CERS4] Member of the two-component regulatory system RegB/RegA. Involved in transactivating anaerobic expression of the photosynthetic apparatus. It is a transcriptional regulator that is responsible for activating expression of the puf, puh, and puc operons in response to a decrease in oxygen tension.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/um/1umq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/um/1umq_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 26: Line 29:
==See Also==
==See Also==
-
*[[Response regulator|Response regulator]]
+
*[[Response regulator 3D structure|Response regulator 3D structure]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Rhodococcus capsulatus molisch 1907]]
+
[[Category: Cereibacter sphaeroides]]
-
[[Category: Laguri, C]]
+
[[Category: Large Structures]]
-
[[Category: Phillips-Jones, M K]]
+
[[Category: Laguri C]]
-
[[Category: Williamson, M P]]
+
[[Category: Phillips-Jones MK]]
-
[[Category: Activator]]
+
[[Category: Williamson MP]]
-
[[Category: Dna binding domain]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Dna-binding protein]]
+
-
[[Category: Helix-turn-helix]]
+
-
[[Category: Phosphorylation]]
+
-
[[Category: Response regulator]]
+
-
[[Category: Sensory transduction]]
+
-
[[Category: Transcription regulation]]
+

Current revision

solution structure and DNA binding of the effector domain from the global regulator PrrA(RegA) from R. sphaeroides: Insights into DNA binding specificity

PDB ID 1umq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools