This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6ena

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:44, 14 June 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Nemertide alpha-1==
==Nemertide alpha-1==
-
<StructureSection load='6ena' size='340' side='right' caption='[[6ena]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='6ena' size='340' side='right'caption='[[6ena]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6ena]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ENA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ENA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6ena]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lineus_longissimus Lineus longissimus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ENA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ENA FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ena FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ena OCA], [http://pdbe.org/6ena PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ena RCSB], [http://www.ebi.ac.uk/pdbsum/6ena PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ena ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ena FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ena OCA], [https://pdbe.org/6ena PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ena RCSB], [https://www.ebi.ac.uk/pdbsum/6ena PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ena ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NEMA1_LINLO NEMA1_LINLO] Highly potent toxin against insect sodium channel (Nav) and with less potent activity against mammalian sodium channels (PubMed:29567943). Potently inhibits inactivation of insect sodium channels of B.germanica (BgNav1) (EC(50)=8.6 nM), D.melanogaster (DmNav1), and arachnid sodium channel V.destructor (VdNav1) (PubMed:29567943, PubMed:34445875). Also delays the inactivation of most mammalian Nav channels tested (hNav1.1/SCN1A; EC(50)=124.1 nM, rNav1.2/SCN2A; EC(50)=359.6 nM, rNav1.3/SCN3A; EC(50)=135.4 nM, rNav1.4/SCN4A; EC(50)=145.5 nM, hNav1.5/SCN5A; EC(50)=138.3 nM, mNav1.6/SCN8A; EC(50)=240.4 nM, hNav1.9/SCN9A; EC(50)=76.5 nM) (PubMed:29567943, PubMed:34445875). 1 uM is enough to completely inhibits the inactivation, resulting in sustained non-inactivating currents (PubMed:29567943). In addition, the toxin significantly enhances the recovery from inactivation, and the open state is not required for the toxin to interact with the channel (PubMed:29567943). In vivo, injection into green crabs (Carcinus maenas at 1 mug/kg) of small doses (1-5 ug/kg) results in slow and fast permanent paralysis, whereas injection of high doses (more than 10 ug/kg) causes death (PubMed:29567943). Injection into juvenile Blaptica dubia cockroaches results in death or permanent paralysis at doses higher than 7.1 ug/kg (PubMed:29567943). Injection into brine shrimp (Artemia salina) stops movement or causes death after 24 hours (EC(50)=0.3 uM) (PubMed:34445875). In the rare inherited cardiac arrhythmia Brugada syndrome 1 (BRGDA1), this toxin is able to restore the loss of function by reducing channel inactivation, without affecting activation, by binding to Nav1.5/SCN5A (PubMed:32850980).<ref>PMID:29567943</ref> <ref>PMID:32850980</ref> <ref>PMID:34445875</ref>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Goransson, U]]
+
[[Category: Large Structures]]
-
[[Category: Jacobsson, E]]
+
-
[[Category: Rosengren, K J]]
+
-
[[Category: Inhibitor cystine knot]]
+
[[Category: Lineus longissimus]]
[[Category: Lineus longissimus]]
-
[[Category: Nemertea]]
+
[[Category: Goransson U]]
-
[[Category: Toxin]]
+
[[Category: Jacobsson E]]
 +
[[Category: Rosengren KJ]]

Current revision

Nemertide alpha-1

PDB ID 6ena

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools