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| - | ==NMR solution structure of vicilin-buried peptide-8 (VBP-8)== | + | ==NMR solution structure of Luffin P1== |
| - | <StructureSection load='6o3s' size='340' side='right'caption='[[6o3s]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='6o3s' size='340' side='right'caption='[[6o3s]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6o3s]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6O3S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6O3S FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6o3s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Luffa_aegyptiaca Luffa aegyptiaca]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6O3S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6O3S FirstGlance]. <br> |
| - | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6o3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6o3s OCA], [https://pdbe.org/6o3s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6o3s RCSB], [https://www.ebi.ac.uk/pdbsum/6o3s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6o3s ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6o3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6o3s OCA], [http://pdbe.org/6o3s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6o3s RCSB], [http://www.ebi.ac.uk/pdbsum/6o3s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6o3s ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/RIP1_LUFAE RIP1_LUFAE]] Inhibits protein synthesis in animal cells.<ref>PMID:12948831</ref> | + | [https://www.uniprot.org/uniprot/RIP1_LUFAE RIP1_LUFAE] Inhibits protein synthesis in animal cells.<ref>PMID:12948831</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6o3s" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6o3s" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: RRNA N-glycosylase]] | + | [[Category: Luffa aegyptiaca]] |
| - | [[Category: Payne, C]] | + | [[Category: Payne C]] |
| - | [[Category: Rosengren, K J]] | + | [[Category: Rosengren KJ]] |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Plant protein]]
| + | |
| - | [[Category: Seed peptide]]
| + | |
| Structural highlights
Function
RIP1_LUFAE Inhibits protein synthesis in animal cells.[1]
Publication Abstract from PubMed
New proteins can evolve by duplication and divergence or de novo, from previously non-coding DNA. A recently observed mechanism is for peptides to evolve within a 'host' protein and emerge by proteolytic processing. The first examples of such interstitial peptides were ones hosted by precursors for seed storage albumin. Interstitial peptides have also been observed in precursors for seed vicilins, but current evidence for vicilin-buried peptides (VBPs) is limited to seeds of the broadleaf plants pumpkin and macadamia. Here, an extensive sequence analysis of vicilin precursors suggested that peptides buried within the N-terminal region of preprovicilins are widespread and truly ancient. Gene sequences indicative of interstitial peptides were found in species from Amborellales to eudicots and include important grass and legume crop species. We show the first protein evidence for a monocot VBP in date palm seeds as well as protein evidence from other crops including the common tomato, sesame and pumpkin relatives, cucumber and the sponge loofah (Luffa aegyptiaca). Their excision was consistent with asparaginyl endopeptidase-mediated maturation and sequences were confirmed by tandem mass spectrometry. Our findings suggest the family is large and ancient and, that based on the NMR solution structures for loofah Luffin P1 and tomato VBP-8, VBPs adopt a helical hairpin fold stapled by two internal disulfide bonds. The first VBPs characterized were a protease inhibitor, anti-microbials, and a ribosome inactivator. The age and evolutionary retention of this peptide family suggests its members play important roles in plant biology.
An ancient peptide family buried within vicilin precursors.,Zhang J, Payne CD, Pouvreau B, Schaefer H, Fisher MF, Taylor NL, Berkowitz O, Whelan J, Rosengren KJ, Mylne JS ACS Chem Biol. 2019 Apr 11. doi: 10.1021/acschembio.9b00167. PMID:30973714[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Li F, Yang XX, Xia HC, Zeng R, Hu WG, Li Z, Zhang ZC. Purification and characterization of Luffin P1, a ribosome-inactivating peptide from the seeds of Luffa cylindrica. Peptides. 2003 Jun;24(6):799-805. PMID:12948831
- ↑ Zhang J, Payne CD, Pouvreau B, Schaefer H, Fisher MF, Taylor NL, Berkowitz O, Whelan J, Rosengren KJ, Mylne JS. An ancient peptide family buried within vicilin precursors. ACS Chem Biol. 2019 Apr 11. doi: 10.1021/acschembio.9b00167. PMID:30973714 doi:http://dx.doi.org/10.1021/acschembio.9b00167
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