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| | ==Mouse RBM20 RRM domain== | | ==Mouse RBM20 RRM domain== |
| - | <StructureSection load='6soe' size='340' side='right'caption='[[6soe]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''> | + | <StructureSection load='6soe' size='340' side='right'caption='[[6soe]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6soe]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6SOE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6soe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SOE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6SOE FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rbm20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6soe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6soe OCA], [https://pdbe.org/6soe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6soe RCSB], [https://www.ebi.ac.uk/pdbsum/6soe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6soe ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6soe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6soe OCA], [http://pdbe.org/6soe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6soe RCSB], [http://www.ebi.ac.uk/pdbsum/6soe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6soe ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/RBM20_MOUSE RBM20_MOUSE]] RNA-binding protein that acts as a regulator of mRNA splicing of a subset of genes involved in cardiac development. Regulates splicing of TTN (Titin).<ref>PMID:22466703</ref> | + | [https://www.uniprot.org/uniprot/RBM20_MOUSE RBM20_MOUSE] RNA-binding protein that acts as a regulator of mRNA splicing of a subset of genes involved in cardiac development. Regulates splicing of TTN (Titin).<ref>PMID:22466703</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Lk3 transgenic mice]] | + | [[Category: Mus musculus]] |
| - | [[Category: Mackereth, C D]] | + | [[Category: Mackereth CD]] |
| - | [[Category: Upadhyay, S K]] | + | [[Category: Upadhyay SK]] |
| - | [[Category: Alternative splicing]]
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| - | [[Category: Rna binding protein]]
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| Structural highlights
Function
RBM20_MOUSE RNA-binding protein that acts as a regulator of mRNA splicing of a subset of genes involved in cardiac development. Regulates splicing of TTN (Titin).[1]
Publication Abstract from PubMed
The vertebrate splicing factor RBM20 (RNA binding motif protein 20) regulates protein isoforms important for heart development and function, with mutations in the gene linked to cardiomyopathy. Previous studies have identified the four nucleotide RNA motif UCUU as a common element in pre-mRNA targeted by RBM20. Here, we have determined the structure of the RNA Recognition Motif (RRM) domain from mouse RBM20 bound to RNA containing a UCUU sequence. The atomic details show that the RRM domain spans a larger region than initially proposed in order to interact with the complete UCUU motif, with a well-folded C-terminal helix encoded by exon 8 critical for high affinity binding. This helix only forms upon binding RNA with the final uracil, and removing the helix reduces affinity as well as specificity. We therefore find that RBM20 uses a coupled folding-binding mechanism by the C-terminal helix to specifically recognize the UCUU RNA motif.
Structural basis of UCUU RNA motif recognition by splicing factor RBM20.,Upadhyay SK, Mackereth CD Nucleic Acids Res. 2020 Mar 18. pii: 5809669. doi: 10.1093/nar/gkaa168. PMID:32187365[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Guo W, Schafer S, Greaser ML, Radke MH, Liss M, Govindarajan T, Maatz H, Schulz H, Li S, Parrish AM, Dauksaite V, Vakeel P, Klaassen S, Gerull B, Thierfelder L, Regitz-Zagrosek V, Hacker TA, Saupe KW, Dec GW, Ellinor PT, MacRae CA, Spallek B, Fischer R, Perrot A, Ozcelik C, Saar K, Hubner N, Gotthardt M. RBM20, a gene for hereditary cardiomyopathy, regulates titin splicing. Nat Med. 2012 May;18(5):766-73. doi: 10.1038/nm.2693. PMID:22466703 doi:http://dx.doi.org/10.1038/nm.2693
- ↑ Upadhyay SK, Mackereth CD. Structural basis of UCUU RNA motif recognition by splicing factor RBM20. Nucleic Acids Res. 2020 Mar 18. pii: 5809669. doi: 10.1093/nar/gkaa168. PMID:32187365 doi:http://dx.doi.org/10.1093/nar/gkaa168
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